Peer-Reviewed Publications

Bellgard MI, Moolhuijzen PM, Guerrero FD, Schibeci D, Rodriguez-Valle M, Peterson DG, Dowd SE, Barrero R, Hunter A, Miller RJ, Lew-Tabor AE (2012) CattleTickBase: An integrated Internet-based bioinformatics resource for Rhipicephalus (Boophilus) microplus. International Journal for Parasitology 42(2): 161-169.

CiteScore: 7.1 • DOI: 10.1016/j.ijpara.2011.11.006 • PMID: 22178513 • SCOPUS ID: 2-s2.0-84856490819 • SCOPUS CITATION COUNT: 58

Williams ML, Gillaspy AF, Dyer DW, Thune RL, Waldbieser GC, Schuster SC, Gipson J, Zaitshik J, Landry C, Banes MM, Lawrence ML (2012) Genome sequence of Edwardsiella ictaluri 93-146, a strain associated with a natural channel catfish outbreak of enteric septicemia of catfish. Journal of Bacteriology 194(3): 740-741.

CiteScore: 6.7 • DOI: 10.1128/JB.06522-11 • PMID: 22247535 • SCOPUS ID: 2-s2.0-84863393638 • SCOPUS CITATION COUNT: 46

Arroyo JI, Hoffmann FG, Opazo JC (2012) Gene duplication and positive selection explains unusual physiological roles of the relaxin gene in the European rabbit. Journal of Molecular Evolution 74(1-2): 52-60.

CiteScore: 4.9 • DOI: 10.1007/s00239-012-9487-2 • PMID: 22354201 • SCOPUS ID: 2-s2.0-84862704942 • SCOPUS CITATION COUNT: 6

Mejia L, McDaniel CD, Corzo A (2012) Dietary influence of digestible lysine concentration on Cobb 500 hen broiler breeder reproductive performance. Poultry Science 91(2): 426-431.

CiteScore: 2.9 • DOI: 10.3382/ps.2011-01710 • PMID: 22252356 • SCOPUS ID: 2-s2.0-84855941971 • SCOPUS CITATION COUNT: 11

St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, Drew JC, Edwards SV, Faircloth BC, Fujita MK, Greenwold MJ, Hoffmann FG, Howard JM, Iguchi T, Janes DE, Khan SY, Kohno S, de Koning AJ, Lance SL, McCarthy FM, McCormack JE, Merchant ME, Peterson DG, Pollock DD, Pourmand N, Raney BJ, Roessler KA, Sanford JR, Sawyer RH, Schmidt CJ, Triplett EW, Tuberville TD, Venegas-Anaya M, Howard JT, Jarvis ED, Guillette LJ, Glenn TC, Green RE, Ray DA (2012) Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes. Genome Biology 13(1): 415.

CiteScore: 15.3 • DOI: 10.1186/gb-2012-13-1-415 • PMID: 22293439 • SCOPUS ID: 2-s2.0-84865022771 • SCOPUS CITATION COUNT: 110

Meganathan PR, Pagan HJ, McCulloch ES, Stevens RD, Ray DA (2012) Complete mitochondrial genome sequences of three bats species and whole genome mitochondrial analyses reveal patterns of codon bias and lend support to a basal split in Chiroptera. Gene 492(1): 121-129.

CiteScore: 2.6 • DOI: 10.1016/j.gene.2011.10.038 • PMID: 22041054 • SCOPUS ID: 2-s2.0-84155180868 • SCOPUS CITATION COUNT: 50

Tang JD, Perkins AD, Sonstegard TS, Schroeder SG, Burgess SC, Diehl SV (2012) Short read sequencing for genomic analysis of the brown rot fungus Fibroporia radiculosa. Applied and Environmental Microbiology 78(7): 2272-2281.

CiteScore: 6.7 • DOI: 10.1128/AEM.06745-11 • PMID: 22247176 • SCOPUS ID: 2-s2.0-84861156864 • SCOPUS CITATION COUNT: 29

Chouvarine P, Cooksey AM, McCarthy FM, Ray DA, Baldwin BS, Burgess SC, Peterson DG (2012) Transcriptome-based differentiation of closely-related Miscanthus lines. PLoS ONE 7(1): e29850.

CiteScore: 4.1 • DOI: 10.1371/journal.pone.0029850 • PMID: 22253803 • SCOPUS ID: 2-s2.0-84855570561 • SCOPUS CITATION COUNT: 21

Cai Z, Zhang T, Wan XF (2012) Antigenic distance measurements for seasonal influenza vaccine selection. Vaccine 30(2): 448-453.

CiteScore: 6.5 • DOI: 10.1016/j.vaccine.2011.10.051 • PMID: 22063385 • SCOPUS ID: 2-s2.0-84355162022 • SCOPUS CITATION COUNT: 26

Garcia-Reyero N, Escalon BL, Loh PR, Laird JG, Kennedy AJ, Berger B, Perkins EJ (2012) Assessment of Chemical Mixtures and Groundwater Effects on Daphnia magna Transcriptomics. Environmental Science and Technology 46(1): 42-50.

CiteScore: 8.6 • DOI: 10.1021/es201245b • PMID: 21744839 • SCOPUS ID: 2-s2.0-84855305777 • SCOPUS CITATION COUNT: 24

Villeneuve DL, Garcia-Reyero N, Escalon BL, Jensen KM, Cavallin JE, Makynen EA, Durhan EJ, Kahl MD, Thomas LM, Perkins EJ, Ankley GT (2012) Ecotoxicogenomics to support ecological risk assessment: a case study with bisphenol a in fish. Environmental Science and Technology 46(1): 51-59.

CiteScore: 8.6 • DOI: 10.1021/es201150a • PMID: 21786754 • SCOPUS ID: 2-s2.0-84855317623 • SCOPUS CITATION COUNT: 85

Blake JA, Dolan M, Drabkin H, Hill DP, Ni L, Sitnikov D, Burgess S, Buza T, Gresham C, McCarthy F, Pillai L, Wang H, Carbon S, Lewis SE, Mungall CJ, Gaudet P, Chisholm RL, Fey P, Kibbe WA, Basu S, Siegele DA, McIntosh BK, Renfro DP, Zweifel AE, Hu JC, Brown NH, Tweedie S, am-Faruque Y, Apweiler R, Auchinchloss A, Axelsen K, Argoud-Puy G, Bely B, Blatter MC, Bougueleret L, Boutet E, Branconi-Quintaje S, Breuza L, Bridge A, Browne P, Chan WM, Coudert E, Cusin I, Dimmer E, Duek-Roggli P, Eberhardt R, Estreicher A, Famiglietti L, Ferro-Rojas S, Feuermann M, Gardner M, Gos A, Gruaz-Gumowski N, Hinz U, Hulo C, Huntley R, James J, Jimenez S, Jungo F, Keller G, Laiho K, Legge D, Lemercier P, Lieberherr D, Magrane M, Martin MJ, Masson P, Moinat M, O'Donovan C, Pedruzzi I, Pichler K, Poggioli D, Porras Millan P, Poux S, Rivoire C, Roechert B, Sawford T, Schneider M, Sehra H, Stanley E, Stutz A, Sundaram S, Tognolli M, Xenarios I, Foulger R, Lomax J, Roncaglia P, Camon E, Khodiyar VK, Lovering RC, Talmud PJ, Chibucos M, Gwinn Giglio M, Dolinski K, Heinicke S, Livstone MS, Stephan R, Harris MA, Oliver SG, Rutherford K, Wood V, Bahler J, Lock A, Kersey PJ, McDowall MD, Staines DM, Dwinell M, Shimoyama M, Laulederkind S, Hayman T, Wang SJ, Petri V, Lowry T, D'Eustachio P, Matthews L, Amundsen CD, Balakrishnan R, Binkley G, Cherry JM, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Hong EL, Karra K, Krieger CJ, Miyasato SR, Nash RS, Park J, Skrzypek MS, Weng S, Wong ED, Berardini TZ, Li D, Huala E, Slonim D, Wick H, Thomas P, Chan J, Kishore R, Sternberg P, Van Auken K, Howe D, Westerfield M (2012) The Gene Ontology: Enhancements for 2011. Nucleic Acids Research 40(D1): D559-D564.

CiteScore: 14.6 • DOI: 10.1093/nar/gkr1028 • PMID: 22102568 • SCOPUS ID: 2-s2.0-84859699831 • SCOPUS CITATION COUNT: 188

Meisenberg C, Tait PS, Dianova II, Wright K, Edelmann MJ, Ternette N, Tasaki T, Kessler BM, Parsons JL, Kwon YT, Dianov GL (2012) Ubiquitin ligase UBR3 regulates cellular levels of the essential DNA repair protein APE1 and is required for genome stability. Nucleic Acids Research 40(2): 701-711.

CiteScore: 14.6 • DOI: 10.1093/nar/gkr744 • PMID: 21933813 • SCOPUS ID: 2-s2.0-84855871792 • SCOPUS CITATION COUNT: 44

Hoffmann FG, Opazo JC, Storz JF (2012) Whole-Genome Duplications Spurred the Functional Diversification of the Globin Gene Superfamily in Vertebrates. Molecular Biology and Evolution 29(1): 303-312.

CiteScore: 12 • DOI: 10.1093/molbev/msr207 • PMID: 21965344 • SCOPUS ID: 2-s2.0-84861376715 • SCOPUS CITATION COUNT: 82

Villanueva F, Sabanadzovic S, Valverde RA, Navas-Castillo J (2012) Complete genome sequence of a double-stranded RNA virus from avocado. Journal of Virology 86(2): 1282-1283.

CiteScore: 9.5 • DOI: 10.1128/JVI.06572-11 • PMID: 22205720 • SCOPUS ID: 2-s2.0-84856855832 • SCOPUS CITATION COUNT: 24

Storz JF, Natarajan C, Cheviron ZA, Hoffmann FG, Kelly JK (2012) Altitudinal Variation at Duplicated beta-Globin Genes in Deer Mice: Effects of Selection, Recombination, and Gene Conversion. Genetics 190(1): 203-216.

CiteScore: 7.6 • DOI: 10.1534/genetics.111.134494 • PMID: 22042573 • SCOPUS ID: 2-s2.0-84855461402 • SCOPUS CITATION COUNT: 37

Pagan HJ, Macas J, Novak P, McCulloch ES, Stevens RD, Ray DA (2012) Survey sequencing reveals elevated DNA transposon activity, novel elements, and variation in repetitive landscapes among vesper bats. Genome Biology and Evolution 4(4): 575-585.

CiteScore: 5.1 • DOI: 10.1093/gbe/evs038 • PMID: 22491057 • SCOPUS ID: 2-s2.0-84864081575 • SCOPUS CITATION COUNT: 34

Abou Ghanem-Sabanadzovic N, Sabanadzovic S, Gugerli P, Rowhani A (2012) Genome organization, serology and phylogeny of Grapevine leafroll-associated viruses 4 and 6: Taxonomic implications. Virus Research 163(1): 120-128.

CiteScore: 4.9 • DOI: 10.1016/j.virusres.2011.09.001 • PMID: 21925555 • SCOPUS ID: 2-s2.0-84855614086 • SCOPUS CITATION COUNT: 40

Kumar R, Lawrence ML, Watt J, Cooksey AM, Burgess SC, Nanduri B (2012) RNA-seq based transcriptional map of bovine respiratory disease pathogen 'Histophilus somni 2336'. PLoS ONE 7(1): e29435.

CiteScore: 4.1 • DOI: 10.1371/journal.pone.0029435 • PMID: 22276113 • SCOPUS ID: 2-s2.0-84856065621 • SCOPUS CITATION COUNT: 23

Pulikanti R, Peebles ED, Zhai W, Gerard PD (2012) Determination of embryonic temperature profiles and eggshell water vapor conductance constants in incubating Ross x Ross 708 broiler hatching eggs using temperature transponders. Poultry Science 91(1): 55-61.

CiteScore: 2.9 • DOI: 10.3382/ps.2011-01759 • PMID: 22184428 • SCOPUS ID: 2-s2.0-83755207341 • SCOPUS CITATION COUNT: 9