Faculty members located in academic
departments/centers can be formally associated with the IGBB in two
different ways:
1. IGBB Fellows
Through its Fellows Program, the
IGBB rewards those faculty who have worked within the IGBB to build a
strong, vibrant molecular biosciences/computational biology research
community at MS State. IGBB Fellows receive not only formal recognition
for their accomplishments, but they are given a voice in many aspects of
IGBB operation including, but not limited to, input on purchases, new hires,
and overall research direction. The IGBB Fellows literally serve as
the Director's Advisory Committee. To be an IGBB Fellow, a faculty member from an academic department
must (1) regularly submit proposals through the IGBB, (2) have had at least one funded external grant (with overhead)
administered through the IGBB, (3) have a record of high-impact scientific
productivity, and (4) have a national/international reputation in his/her
field. IGBB Fellows have full "internal user" access to the HPC² supercomputers and receive HPC²
computer, technical, and administrative support.
2. IGBB Faculty Affiliates
An IGBB Faculty Affiliate is any faculty member in an MS State academic department who (1) conducts research
in the molecular biosciences and/or computational biology and (2) collaborates in some manner with IGBB faculty/staff. Like IGBB Fellows, IGBB Faculty Affiliates are encouraged to submit proposals through the IGBB, but
are not obligated to do so. IGBB Faculty Affiliates generally do not
have HPC² supercomputer access unless they are working on an IGBB
research project. Faculty Affiliates can request access to the HPC²
supercomputers if they are interested in generating data/results for an eventual proposal submission
through the IGBB. Any IGBB Faculty Affiliate that submits and receives an external grant (with
overhead) through the IGBB will be eligible for the IGBB Fellows Program.

AgBase: a unified resource for functional analysis in agriculture
IGBB Authors:
Fiona M. McCarthy, Susan M. Bridges, Nan Wang, G. Bryce Magee, Bindu Nanduri, Mark L. Lawrence, Shane C. BurgessPUBLICATION YEAR:
2007IMPACT FACTOR:
7.444CITATION COUNT:
89McCarthy FM, Bridges SM, Wang N, Magee GB, Williams WP, Luthe DS, Burgess SC (2007) AgBase: a unified resource for functional analysis in agriculture.
Nucleic Acids Research 35(Database issue): D599-D603.
DOI:
10.1093/nar/gkl936EID:
2-s2.0-33846081387PMID: 17135208
DOWNLOAD PDFABSTRACTAnalysis of functional genomics (transcriptomics and proteomics) datasets is hindered in agricultural species because agricultural genome sequences have relatively poor structural and functional annotation. To facilitate systems biology in these species we have established the curated, web-accessible, public resource 'AgBase' (www.agbase.msstate.edu). We have improved the structural annotation of agriculturally important genomes by experimentally confirming the in vivo expression of electronically predicted proteins and by proteogenomic mapping. Proteogenomic data are available from the AgBase proteogenomics link. We contribute Gene Ontology (GO) annotations and we provide a two tier system of GO annotations for users. The 'GO Consortium' gene association file contains the most rigorous GO annotations based solely on experimental data. The 'Community' gene association file contains GO annotations based on expert community knowledge (annotations based directly from author statements and submitted annotations from the community) and annotations for predicted proteins. We have developed two tools for proteomics analysis and these are freely available on request. A suite of tools for analyzing functional genomics datasets using the GO is available online at the AgBase site. We encourage and publicly acknowledge GO annotations from researchers and provide an online mechanism for agricultural researchers to submit requests for GO annotations.
Dr. Daniel G. Peterson
Professor and Dept. Head
IGBB Fellow
(662) 325-3200
Dr. Matthew W. Brown
Associate Professor
IGBB Fellow
(662) 325-2406
Dr. Bindu Nanduri
Professor
IGBB Fellow
(662) 325-4217
Dr. Zhaohua Peng
Professor
IGBB Fellow
(662) 325-0685
Dr. Hossam Abdelhamed
Assistant Research Professor
IGBB Affiliate
(662) 325-1125
Dr. Pratima Acharya Adhikari
Assistant Professor
IGBB Affiliate
(662) 325-3416
Dr. Peter J. Allen
Professor
IGBB Affiliate
(662) 325-4768
Dr. Ashli Brown
Professor
IGBB Affiliate
(662) 325-3324
Dr. Sam Chang
Professor
IGBB Affiliate
(662) 325-3200
Dr. Sandra B. Correa
Assistant Professor
IGBB Affiliate
(662) 325-0158
Dr. Angus Dawe
Professor
IGBB Affiliate
(662) 325-7577
Dr. Peixin Fan
Assistant Professor
IGBB Affiliate
(662) 325-0963
Dr. Jean M.N. Feugang
Associate Research Professor
IGBB Affiliate
(662) 325-7567
Dr. Christine Fortuin
Assistant Professor
IGBB Affiliate
(662) 325-0282
Dr. Federico G. Hoffmann
Associate Professor
IGBB Affiliate
(662) 325-2763
Dr. Attila Karsi
Professor
IGBB Affiliate
(662) 325-0405
Dr. Margaret L. Khaitsa
Professor
IGBB Affiliate
(662) 325-1365
Dr. William Kingery
Professor
IGBB Affiliate
(662) 325-2311
Dr. Andrew Kouba
Professor
IGBB Affiliate
(662) 325-2378
Dr. Natraj (Krish) Krishnan
Associate Professor
IGBB Affiliate
(662) 325-2978
Dr. Mark Lawrence
Professor
IGBB Affiliate
(662) 325-1205
Dr. Caleb Lemley
Associate Professor
IGBB Affiliate
(662) 325-2934
Dr. Shien Lu
Professor
IGBB Affiliate
(662) 325-3511
Dr. Benjamin Magbanua
Associate Professor
IGBB Affiliate
(662) 325-9777
Dr. Florencia Meyer
Associate Professor
IGBB Affiliate
(662) 325-7734
Dr. Ramakrishna (Rama) Nannapaneni
Research Professor
IGBB Affiliate
(662) 325-7697
Dr. Diana Outlaw
Associate Professor
IGBB Affiliate
(662) 325-4803
Dr. E. David Peebles
Professor
IGBB Affiliate
(662) 325-3379
Dr. Andy Perkins
Professor
IGBB Affiliate
(662) 325-0004
Dr. Lauren Priddy
Assistant Professor
IGBB Affiliate
(662) 325-5988
Dr. K. Raja Reddy
Research Professor
IGBB Affiliate
(662) 325-9463
Dr. Leyla Rios de Alvarez
Assistant Professor
IGBB Affiliate
(662) 325-2802
Dr. Sejo Sabanadzovic
Professor
IGBB Affiliate
(662) 325-9322
Dr. Michael Sandel
Assistant Professor
IGBB Affiliate
(662) 325-3133
Dr. Wes Schilling
Professor
IGBB Affiliate
(662) 325-9456
Dr. Keun-Seok Seo
Associate Professor
IGBB Affiliate
(662) 325-1419
Dr. Xueyan Shan
Associate Research Professor
IGBB Affiliate
(662) 325-2640
Dr. Rubin Shmulsky
Professor
IGBB Affiliate
(662) 325-2243
Dr. Juan L. Silva
Professor
IGBB Affiliate
(662) 325-3200
Dr. C. Beth Stokes
Associate Professor
IGBB Affiliate
(662) 325-5811
Dr. Justin Thornton
Associate Professor
IGBB Affiliate
(662) 325-8020
Dr. Te-Ming (Paul) Tseng
Associate Professor
IGBB Affiliate
(662) 325-4725
Dr. Carrie Vance
Associate Research Professor
IGBB Affiliate
(662) 325-2640
Dr. Guiming Wang
Professor
IGBB Affiliate
(662) 325-0414
Dr. Mark Welch
Professor
IGBB Affiliate
(662) 325-7564
Dr. Li Zhang
Assistant Research Professor
IGBB Affiliate
(662) 325-3416
Dr. Xue Zhang
Assistant Research Professor
IGBB Affiliate
(662) 325-3200
Former Fellows & Affiliates (Position with IGBB; Current Institution)
- Wen-Hsing Cheng (Affiliate; Texas Woman's University)
- Thu Dinh (Affiliate; Tyson Foods)
- Esteban Galeano (Affiliate; Weyerhaeuser)
- Austin Himes (Affiliate; Washington State University)
- Dr. Sorina Popescu (Affiliate; Retired)
- Dr. Stephen B. Pruett (Affiliate; Retired)
- Dr. John Riggins (Affiliate; Oregon State University)
- Jeffrey F.D. Dean (Affiliate; University of Georgia)
- Jonas King (Affiliate)
- Hongxu Dong (Affiliate; Goldman Sachs, Atlanta)
- Terezie Tolar-Peterson (Affiliate; California State University, San Bernadino)
- Erdogan Memili (Affiliate; Prairie View A&M University)
- Gregory Bohach (Affiliate; Retired)
- Brian A. Counterman (Affiliate; Auburn University)
- Renita Horton (Affiliate; University of Houston)
- Xiu-feng "Henry" Wan (Affiliate; University of Missouri)
- Din-Pow Ma (Affiliate; Retired)
- David A. Ray (Fellow; Texas Tech University)
- Shane C. Burgess (Fellow & former IGBB Director; University of Arizona)
- Fiona M. McCarthy (Fellow; University of Arizona)
- Susan M. Bridges (Fellow; Retired)
- Susan V. Diehl (Affiliate; Retired)
- James N. Warnock (Affiliate; University of Georgia)
- Dragica Jeremic Nikolic (Affiliate; University of Toronto)
- Cetin Yuceer (Affiliate; Turkey)
The IGBB is supported, in part, by the following units:
The IGBB is an HPC² member center.