Peer-Reviewed Publications

Payne A, Schmidt TB, Nanduri B, Pendarvis K, Pittman JR, Thornton JA, Grissett J, Donaldson JR (2013) Proteomic analysis of the response of Listeria monocytogenes to bile salts under anaerobic conditions. Journal of Medical Microbiology 62(Pt 1): 25-35.

CiteScore: 4 • DOI: 10.1099/jmm.0.049742-0 • PMID: 22977076 • SCOPUS ID: 2-s2.0-84871120845 • SCOPUS CITATION COUNT: 23

Magbanua ZV, Williams WP, Luthe DS (2013) The maize rachis affects Aspergillus flavus spread during ear development. Maydica 58(2): 182-188.

CiteScore: 0.9 • SCOPUS ID: 2-s2.0-84880638391 • SCOPUS CITATION COUNT: 9

Tekedar HC, Karsi A, Williams ML, Vamenta S, Banes MM, Duke M, Scheffler BE, Lawrence ML (2013) Complete Genome Sequence of Channel Catfish Gastrointestinal Septicemia Isolate Edwardsiella tarda C07-087. Genome Announcements 1(6): e00959-13.

CiteScore: n/a • DOI: 10.1128/genomeA.00959-13 • PMID: 24265493 • SCOPUS ID: 2-s2.0-84999622107 • SCOPUS CITATION COUNT: 21

Tekedar HC, Waldbieser GC, Karsi A, Liles MR, Griffin MJ, Vamenta S, Sonstegard T, Hossain M, Schroeder SG, Khoo L, Lawrence ML (2013) Complete Genome Sequence of a Channel Catfish Epidemic Isolate, Aeromonas hydrophila Strain ML09-119. Genome Announcements 1(5): e00755-13.

CiteScore: n/a • DOI: 10.1128/genomeA.00755-13 • PMID: 24051325 • SCOPUS CITATION COUNT:

Paterson AH, Wendel JF, Gundlach H, Guo H, Jenkins J, Jin D, Llewellyn D, Showmaker KC, Shu S, Udall J, Yoo MJ, Byers R, Chen W, Doron-Faigenboim A, Duke MV, Gong L, Grimwood J, Grover C, Grupp K, Hu G, Lee TH, Li J, Lin L, Liu T, Marler BS, Page JT, Roberts AW, Romanel E, Sanders WS, Szadkowski E, Tan X, Tang H, Xu C, Wang J, Wang Z, Zhang D, Zhang L, Ashrafi H, Bedon F, Bowers JE, Brubaker CL, Chee PW, Das S, Gingle AR, Haigler CH, Harker D, Hoffmann LV, Hovav R, Jones DC, Lemke C, Mansoor S, Rahman M, Rainville LN, Rambani A, Reddy UK, Rong JK, Saranga Y, Scheffler BE, Scheffler JA, Stelly DM, Triplett BA, Van Deynze A, Vaslin MF, Waghmare VN, Walford SA, Wright RJ, Zaki EA, Zhang T, Dennis ES, Mayer KF, Peterson DG, Rokhsar DS, Wang X, Schmutz J (2012) Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature 492(7429): 423-427.

CiteScore: 51 • DOI: 10.1038/nature11798 • PMID: 23257886 • SCOPUS ID: 2-s2.0-84871428041 • SCOPUS CITATION COUNT: 961

Feugang JM, Youngblood RC, Greene JM, Fahad AS, Monroe WA, Willard ST,Ryan PL (2012) Application of quantum dot nanoparticles for potential non-invasive bio-imaging of mammalian spermatozoa. Journal of Nanobiotechnology 10: 45.

CiteScore: 4.6 • DOI: 10.1186/1477-3155-10-45 • PMID: 23241497 • SCOPUS ID: 2-s2.0-84870914598 • SCOPUS CITATION COUNT: 51

Mackay J, Dean JF, Plomion C, Peterson DG, Canovas FM, Pavy N, Ingvarsson PK, Savolainen O, Guevara MA, Fluch S, Vinceti B, Abarca D, Diaz-Sala C, Cervera MT (2012) Towards decoding the conifer giga-genome. Plant Molecular Biology 80(6): 555-569.

CiteScore: 7.7 • DOI: 10.1007/s11103-012-9961-7 • PMID: 22960864 • SCOPUS ID: 2-s2.0-84870241165 • SCOPUS CITATION COUNT: 76

Pirim H, Eksioglu B, Perkins AD, Yuceer C (2012) Clustering of high throughput gene expression data. Computers and Operations Research 39(12): 3046-3061.

CiteScore: 5.6 • DOI: 10.1016/j.cor.2012.03.008 • SCOPUS ID: 2-s2.0-84862994964 • SCOPUS CITATION COUNT: 94

Rodriguez-Osorio N, Urrego R, Cibelli JB, Eilertsen K,Memili E (2012) Reprogramming mammalian somatic cells. Theriogenology 78(9): 1869-1886.

CiteScore: 3.4 • DOI: 10.1016/j.theriogenology.2012.05.030 • PMID: 22979962 • SCOPUS ID: 2-s2.0-84868199540 • SCOPUS CITATION COUNT: 90

Pillai L, Chouvarine P, Tudor CO, Schmidt CJ, Vijay-Shanker K, McCarthy FM (2012) Developing a biocuration workflow for AgBase, a non-model organism database. Database 2012: bas038.

CiteScore: 4.6 • DOI: 10.1093/database/bas038 • PMID: 23160411 • SCOPUS CITATION COUNT: 8

Curotto S, Lunsford K, Smith W, Thomason J, Bulla C (2012) Evidence of selective packaging and different alpha-granule subtypes in canine platelets. Journal of Comparative Pathology 147(4): 499-502.

CiteScore: 2.5 • DOI: 10.1016/j.jcpa.2012.02.007 • PMID: 22516083 • SCOPUS ID: 2-s2.0-84868622965 • SCOPUS CITATION COUNT: 3

Manda P, Ozkan S, Wang H, McCarthy F, Bridges SM (2012) Cross-Ontology multi-level association rule mining in the Gene Ontology. PLoS ONE 7(10): e47411.

CiteScore: 4.1 • DOI: 10.1371/journal.pone.0047411 • PMID: 23071802 • SCOPUS ID: 2-s2.0-84867416846 • SCOPUS CITATION COUNT: 31

Weed BC, Borazjani A, Patnaik SS, Prabhu R, Horstemeyer MF, Ryan PL, Franz T, Williams LN, Liao J (2012) Stress state and strain rate dependence of the human placenta. Annals of Biomedical Engineering 40(10): 2255-2265.

CiteScore: 5.1 • DOI: 10.1007/s10439-012-0588-2 • PMID: 22581478 • SCOPUS ID: 2-s2.0-84867231512 • SCOPUS CITATION COUNT: 13

Poudel B, Sabanadzovic S, Bujarski J, Tzanetakis IE (2012) Population structure of Blackberry yellow vein associated virus, an emerging crinivirus. Virus Research 169(1): 272-275.

CiteScore: 4.9 • DOI: 10.1016/j.virusres.2012.07.009 • PMID: 22820400 • SCOPUS ID: 2-s2.0-84867216458 • SCOPUS CITATION COUNT: 20

Bhatty M, Fan R, Muir WM, Pruett SB, Nanduri B (2012) Transcriptomic analysis of peritoneal cells in a mouse model of sepsis: confirmatory and novel results in early and late sepsis. BMC Genomics 13: 509.

CiteScore: 7.3 • DOI: 10.1186/1471-2164-13-509 • PMID: 23009705 • SCOPUS ID: 2-s2.0-84866557005 • SCOPUS CITATION COUNT: 8

Hsu CY, Adams JP, No K, Liang H, Meilan R, Pechanova O, Barakat A, Carlson JE, Page GP, Yuceer C (2012) Overexpression of CONSTANS homologs CO1 and CO2 fails to alter normal reproductive onset and fall bud set in woody perennial poplar. PLoS ONE 7(9): e45448.

CiteScore: 4.1 • DOI: 10.1371/journal.pone.0045448 • PMID: 23029015 • SCOPUS ID: 2-s2.0-84866555351 • SCOPUS CITATION COUNT: 51

Kumar S, Kunec D, Buza JJ, Chiang HI, Zhou H, Subramaniam S, Pendarvis K, Cheng HH, Burgess SC (2012) Nuclear Factor kappa B is central to Marek's disease herpesvirus induced neoplastic transformation of CD30 expressing lymphocytes in-vivo. BMC Systems Biology 6: 123.

CiteScore: 5.4 • DOI: 10.1186/1752-0509-6-123 • PMID: 22979947 • SCOPUS ID: 2-s2.0-84866173282 • SCOPUS CITATION COUNT: 18

Govindaraju A, Uzun A, Robertson L, Atli MO, Kaya A, Topper E, Crate EA, Padbury J, Perkins A,Memili E (2012) Dynamics of microRNAs in bull spermatozoa. Reproductive Biology and Endocrinology 10: 82.

CiteScore: 4 • DOI: 10.1186/1477-7827-10-82 • PMID: 22978562 • SCOPUS ID: 2-s2.0-84866165341 • SCOPUS CITATION COUNT: 78

Reddy JS, Kumar R, Watt JM, Lawrence ML, Burgess SC, Nanduri B (2012) Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213. BMC Bioinformatics 13(Suppl 15): S4.

CiteScore: 6 • DOI: 10.1186/1471-2105-13-S15-S4 • PMID: 23046475 • SCOPUS CITATION COUNT: 10

Cai Z, Ducatez MF, Yang J, Zhang T, Long LP, Boon AC, Webby RJ, Wan XF (2012) Identifying antigenicity-associated sites in highly pathogenic H5N1 influenza virus hemagglutinin by using sparse learning. Journal of Molecular Biology 422(1): 145-155.

CiteScore: 8.3 • DOI: 10.1016/j.jmb.2012.05.011 • PMID: 22609437 • SCOPUS ID: 2-s2.0-84864583226 • SCOPUS CITATION COUNT: 42