Peer-Reviewed Publications

Malone BM, Tan F, Bridges SM, Peng Z (2011) Comparison of four ChIP-Seq analytical algorithms using rice endosperm H3K27 trimethylation profiling data. PLoS ONE 6(9): e25260.

CiteScore: 4.5 • DOI: 10.1371/journal.pone.0025260 • PMID: 21984925 • SCOPUS ID: 2-s2.0-80053599512 • SCOPUS CITATION COUNT: 52

Alfoldi J, Di Palma F, Grabherr M, Williams C, Kong L, Mauceli E, Russell P, Lowe CB, Glor RE, Jaffe JD, Ray DA, Boissinot S, Shedlock AM, Botka C, Castoe TA, Colbourne JK, Fujita MK, Moreno RG, ten Hallers BF, Haussler D, Heger A, Heiman D, Janes DE, Johnson J, de Jong PJ, Koriabine MY, Lara M, Novick PA, Organ CL, Peach SE, Poe S, Pollock DD, de Queiroz K, Sanger T, Searle S, Smith JD, Smith Z, Swofford R, Turner-Maier J, Wade J, Young S, Zadissa A, Edwards SV, Glenn TC, Schneider CJ, Losos JB, Lander ES, Breen M, Ponting CP, Lindblad-Toh K (2011) The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature 477(7366): 587-591.

CiteScore: 53.1 • DOI: 10.1038/nature10390 • PMID: 21881562 • SCOPUS ID: 2-s2.0-80053359585 • SCOPUS CITATION COUNT: 491

La H, Ding B, Mishra GP, Zhou B, Yang H, Bellizzi Mdel R, Chen S, Meyers BC, Peng Z, Zhu JK,Wang GL (2011) A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice. Proceedings of the National Academy of Sciences of the United States of America 108(37): 15498-15503.

CiteScore: 16.8 • DOI: 10.1073/pnas.1112704108 • PMID: 21896764 • SCOPUS ID: 2-s2.0-80053065324 • SCOPUS CITATION COUNT: 77

Donaldson JR, Nanduri B, Pittman JR, Givaruangsawat S, Burgess SC, Lawrence ML (2011) Proteomic expression profiles of virulent and avirulent strains of Listeria monocytogenes isolated from macrophages. Journal of Proteomics 74(10): 1906-1917.

CiteScore: 5.4 • DOI: 10.1016/j.jprot.2011.05.008 • PMID: 21605710 • SCOPUS ID: 2-s2.0-80052029934 • SCOPUS CITATION COUNT: 25

Gu G, Smith L, Liu A, Lu SE (2011) Genetic and biochemical map for the biosynthesis of occidiofungin, an antifungal produced by Burkholderia contaminans strain MS14. Applied and Environmental Microbiology 77(17): 6189-6198.

CiteScore: 6.4 • DOI: 10.1128/AEM.00377-11 • PMID: 21742901 • SCOPUS ID: 2-s2.0-80052774418 • SCOPUS CITATION COUNT: 45

Bhatty M, Pruett SB, Swiatlo E, Nanduri B (2011) Alcohol abuse and Streptococcus pneumoniae infections: consideration of virulence factors and impaired immune responses. Alcohol 45(6): 523-539.

CiteScore: 4.1 • DOI: 10.1016/j.alcohol.2011.02.305 • PMID: 21827928 • SCOPUS ID: 2-s2.0-79961134647 • SCOPUS CITATION COUNT: 47

Blaschek M, Kaya A, Zwald N, Memili E, Kirkpatrick BW (2011) A whole-genome association analysis of noncompensatory fertility in Holstein bulls. Journal of Dairy Science 94(9): 4695-4699.

CiteScore: 4 • DOI: 10.3168/jds.2010-3728 • PMID: 21854943 • SCOPUS ID: 2-s2.0-80051777393 • SCOPUS CITATION COUNT: 41

Sabanadzovic S, Abou Ghanem-Sabanadzovic N, Tzanetakis IE (2011) Blackberry virus E: an unusual flexivirus. Archives of Virology 156(9): 1665-1669.

CiteScore: 3.6 • DOI: 10.1007/s00705-011-1015-y • PMID: 21656298 • SCOPUS ID: 2-s2.0-80052265592 • SCOPUS CITATION COUNT: 19

Kim TJ, Corbitt MP, Silva JL, Wang DS, Jung YS, Spencer B (2011) Optimization of Hot Water Treatment for Removing Microbial Colonies on Fresh Blueberry Surface. Journal of Food Science 76(6): M353-M360.

CiteScore: 2.7 • DOI: 10.1111/j.1750-3841.2011.02209.x • PMID: 21623784 • SCOPUS ID: 2-s2.0-79961111258 • SCOPUS CITATION COUNT: 7

Reed RD, Papa R, Martin A, Hines HM, Counterman BA, Pardo-Diaz C, Jiggins CD, Chamberlain NL, Kronforst MR, Chen R, Halder G, Nijhout HF,McMillan WO (2011) Optix drives the repeated convergent evolution of butterfly wing pattern mimicry. Science 333(6046): 1137-41.

CiteScore: 44.7 • DOI: 10.1126/science.1208227 • PMID: 21778360 • SCOPUS ID: 2-s2.0-80052151984 • SCOPUS CITATION COUNT: 328

Schipke KJ, To SD, Warnock JN (2011) Design of a cyclic pressure bioreactor for the ex vivo study of aortic heart valves. Journal of Visualized Experiments 54: 3316.

CiteScore: 1.1 • DOI: 10.3791/3316 • PMID: 21876532 • SCOPUS CITATION COUNT:

Outlaw DC, Ricklefs RE (2011) Rerooting the evolutionary tree of malaria parasites. Proceedings of the National Academy of Sciences of the United States of America 108(32): 13183-13187.

CiteScore: 16.8 • DOI: 10.1073/pnas.1109153108 • PMID: 21730128 • SCOPUS ID: 2-s2.0-80051960846 • SCOPUS CITATION COUNT: 62

Bright LA, Mujahid N, Nanduri B, McCarthy FM, Costa LR, Burgess SC, Swiderski CE (2011) Functional modelling of an equine bronchoalveolar lavage fluid proteome provides experimental confirmation and functional annotation of equine genome sequences. Animal Genetics 42(4): 395-405.

CiteScore: 3.6 • DOI: 10.1111/j.1365-2052.2010.02158.x • PMID: 21749422 • SCOPUS ID: 2-s2.0-79960363654 • SCOPUS CITATION COUNT: 8

Soni KA, Nannapaneni R, Tasara T (2011) The contribution of transcriptomic and proteomic analysis in elucidating stress adaptation responses of Listeria monocytogenes. Foodborne Pathogens and Disease 8(8): 843-852.

CiteScore: 3 • DOI: 10.1089/fpd.2010.0746 • PMID: 21495855 • SCOPUS ID: 2-s2.0-79960552251 • SCOPUS CITATION COUNT: 64

Warnock JN, Nanduri B, Pregonero Gamez CA, Tang J, Koback D, Muir WM, Burgess SC (2011) Gene Profiling of Aortic Valve Interstitial Cells under Elevated Pressure Conditions: Modulation of Inflammatory Gene Networks. International Journal of Inflammation 2011: 176412.

CiteScore: n/a • DOI: 10.4061/2011/176412 • PMID: 21876831 • SCOPUS CITATION COUNT:

Castoe TA, de Koning JA, Hall KT, Yokoyama KD, Gu W, Smith EN, Feschotte C, Uetz P, Ray DA, Dobry J, Bogden R, Mackessy SP, Bronikowski AM, Warren WC, Secor SM, Pollock DD (2011) Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes. Genome Biology 12(7): 406.

CiteScore: 12.7 • DOI: 10.1186/gb-2011-12-7-406 • PMID: 21801464 • SCOPUS ID: 2-s2.0-79960891921 • SCOPUS CITATION COUNT: 52

Song G, Hsu CH, Riemer C, Zhang Y, Kim HL, Hoffmann FG, Zhang L, Hardison RC, Green ED, Miller W (2011) Conversion events in gene clusters. BMC Evolutionary Biology 11: 226.

CiteScore: 5.9 • DOI: 10.1186/1471-2148-11-226 • PMID: 21798034 • SCOPUS ID: 2-s2.0-79960653555 • SCOPUS CITATION COUNT: 11

Moolhuijzen PM, Lew-Tabor AE, Morgan JA, Valle MR, Peterson DG, Dowd SE, Guerrero FD, Bellgard MI, Appels R (2011) The complexity of Rhipicephalus (Boophilus) microplus genome characterised through detailed analysis of two BAC clones. BMC Research Notes 4: 254.

CiteScore: 1.7 • DOI: 10.1186/1756-0500-4-254 • PMID: 21777481 • SCOPUS ID: 2-s2.0-79960565948 • SCOPUS CITATION COUNT: 7

Scott VL, Shack LA, Eells JB, Ryan PL, Donaldson JR, Coats KS (2011) Immunomodulator expression in trophoblasts from the feline immunodeficiency virus (FIV)-infected cat. Virology Journal 8: 336.

CiteScore: 2.9 • DOI: 10.1186/1743-422X-8-336 • PMID: 21729293 • SCOPUS ID: 2-s2.0-79959838779 • SCOPUS CITATION COUNT: 10

Adams JP, Adeli A, Hsu CY, Harkess RL, Page GP, dePamphilis CW, Schultz EB,Yuceer C (2011) Poplar maintains zinc homeostasis with heavy metal genes HMA4 and PCS1. Journal of Experimental Botany 62(11): 3737-3752.

CiteScore: 8.1 • DOI: 10.1093/jxb/err025 • PMID: 21504875 • SCOPUS ID: 2-s2.0-79960542625 • SCOPUS CITATION COUNT: 50