Peer-Reviewed Publications

Pirim H, Eksioglu B, Perkins AD (2015) Clustering high throughput biological data with B-MST, a minimum spanning tree based heuristic. Computers in Biology and Medicine 62: 94-102. DOI: 10.1016/j.compbiomed.2015.03.031 • SCOPUS ID: 2-s2.0-84928394923 • SCOPUS CITATION COUNT: 17

Hawkins LK, Mylroie JE, Oliveira DA, Smith JS, Ozkan S, Windham GL, Williams WP, Warburton ML (2015) Characterization of the Maize Chitinase Genes and Their Effect on Aspergillus flavus and Aflatoxin Accumulation Resistance. PLoS ONE 10(6): e0126185. DOI: 10.1371/journal.pone.0126185 • SCOPUS ID: 2-s2.0-84907046009 • SCOPUS CITATION COUNT: 58

Feugang JM, Youngblood RC, Greene JM, Willard ST,Ryan PL (2015) Self-illuminating quantum dots for non-invasive bioluminescence imaging of mammalian gametes. Journal of Nanobiotechnology 13: 38. DOI: 10.1186/s12951-015-0097-1 • SCOPUS ID: 2-s2.0-84930665354 • SCOPUS CITATION COUNT: 39

Kaplan BL, Li J, LaPres JJ, Pruett SB, Karmaus PW (2015) Contributions of nonhematopoietic cells and mediators to immune responses: implications for immunotoxicology. Toxicological Sciences 145(2): 214-232. DOI: 10.1093/toxsci/kfv060 • SCOPUS ID: 2-s2.0-84930737199 • SCOPUS CITATION COUNT: 12

Abdelhamed H, Lawrence ML, Karsi A (2015) A novel suicide plasmid for efficient gene mutation in Listeria monocytogenes. Plasmid 81: 1-8. DOI: 10.1016/j.plasmid.2015.05.003 • SCOPUS ID: 2-s2.0-84930937782 • SCOPUS CITATION COUNT: 29

Kovalchuk A, Raffaello T, Jaber E, Kerio S, Ghimire R, Lorenz WW, Dean JF, Holopainen JK, Asiegbu FO (2015) Activation of defence pathways in Scots pine bark after feeding by pine weevil (Hylobius abietis). BMC Genomics 16: 352. DOI: 10.1186/s12864-015-1546-9 • SCOPUS ID: 2-s2.0-84928793342 • SCOPUS CITATION COUNT: 34

Zhang T, Hu Y, Jiang W, Fang L, Guan X, Chen J, Zhang J, Saski CA, Scheffler BE, Stelly DM, Hulse-Kemp AM, Wan Q, Liu B, Liu C, Wang S, Pan M, Wang Y, Wang D, Ye W, Chang L, Zhang W, Song Q, Kirkbride RC, Chen X, Dennis E, Llewellyn DJ, Peterson DG, Thaxton P, Jones DC, Wang Q, Xu X, Zhang H, Wu H, Zhou L, Mei G, Chen S, Tian Y, Xiang D, Li X, Ding J, Zuo Q, Tao L, Liu Y, Li J, Lin Y, Hui Y, Cao Z, Cai C, Zhu X, Jiang Z, Zhou B, Guo W, Li R, Chen ZJ (2015) Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement. Nature Biotechnology 33(5): 531-537. DOI: 10.1038/nbt.3207 • SCOPUS ID: 2-s2.0-84929171720 • SCOPUS CITATION COUNT: 1384

Shields-Menard SA, Amirsadeghi M, Sukhbaatar B, Revellame E, Hernandez R, Donaldson JR, French WT (2015) Lipid accumulation by Rhodococcus rhodochrous grown on glucose. Journal of Industrial Microbiology and Biotechnology 42(5): 693-699. DOI: 10.1007/s10295-014-1564-7 • SCOPUS ID: 2-s2.0-84939982908 • SCOPUS CITATION COUNT: 38

Bednarova A, Kodrik D, Krishnan N (2015) Knockdown of adipokinetic hormone synthesis increases susceptibility to oxidative stress in Drosophila--a role for dFoxO?. Comparative Biochemistry and Physiology C - Toxicology and Pharmacology 171: 8-14. DOI: 10.1016/j.cbpc.2015.03.006 • SCOPUS ID: 2-s2.0-84925783892 • SCOPUS CITATION COUNT: 35

Martin JL, Knapp CR, Gerber GP, Thorpe RS, Welch ME (2015) Phylogeography of the endangered lesser antillean iguana, iguana delicatissima: a recent diaspora in an archipelago known for ancient herpetological endemism. Journal of Heredity 106(3): 315-321. DOI: 10.1093/jhered/esv004 • SCOPUS ID: 2-s2.0-84929577709 • SCOPUS CITATION COUNT: 16

Liu Y, Baird SM, Qiao J, Du Y, Lu SE (2015) SecG is required for antibiotic activities of Pseudomonas sp. YL23 against Erwinia amylovora and Dickeya chrysanthemi. Journal of Basic Microbiology 55(5): 617-624. DOI: 10.1002/jobm.201400491 • SCOPUS ID: 2-s2.0-84928411693 • SCOPUS CITATION COUNT: 4

Ye J, Wen F, Xu Y, Zhao N, Long L, Sun H, Yang J, Cooley J, Pharr GT, Webby R, Wan XF (2015) Error-prone pcr-based mutagenesis strategy for rapidly generating high-yield influenza vaccine candidates. Virology 482: 234-243. DOI: 10.1016/j.virol.2015.03.051 • SCOPUS ID: 2-s2.0-84927750319 • SCOPUS CITATION COUNT: 16

Opazo JC, Hoffmann FG, Natarajan C, Witt CC, Berenbrink M,Storz JF (2015) Gene turnover in the avian globin gene families and evolutionary changes in hemoglobin isoform expression. Molecular Biology and Evolution 32(4): 871-87. DOI: 10.1093/molbev/msu341 • SCOPUS ID: 2-s2.0-84988304467 • SCOPUS CITATION COUNT: 41

Uzbas F, May ID, Parisi AM, Thompson SK, Kaya A, Perkins AD, Memili E (2015) Molecular physiognomies and applications of adipose-derived stem cells. Stem Cell Reviews and Reports 11(2): 298-308. DOI: 10.1007/s12015-014-9578-0 • SCOPUS ID: 2-s2.0-84928683482 • SCOPUS CITATION COUNT: 40

Dogan S, Vargovic P, Oliveira R, Belser LE, Kaya A, Moura A, Sutovsky P, Parrish J, Topper E, Memili E (2015) Sperm protamine-status correlates to the fertility of breeding bulls. Biology of Reproduction 92(4): 92. DOI: 10.1095/biolreprod.114.124255 • SCOPUS ID: 2-s2.0-84930588268 • SCOPUS CITATION COUNT: 101

Outlaw RK, Counterman B, Outlaw DC (2015) Differential patterns of molecular evolution among Haemosporidian parasite groups. Parasitology 142(4): 612-622. DOI: 10.1017/S0031182014001668 • SCOPUS ID: 2-s2.0-84924760206 • SCOPUS CITATION COUNT: 9

Khankhum S, Valverde RA, Pastor-Corrales MA, Osorno JM, Sabanadzovic S (2015) Two endornaviruses show differential infection patterns between gene pools of Phaseolus vulgaris. Archives of Virology 160(4): 1131-1137. DOI: 10.1007/s00705-015-2335-0 • SCOPUS ID: 2-s2.0-84925461335 • SCOPUS CITATION COUNT: 20

Tekedar HC, Karsi A, Akgul A, Kalindamar S, Waldbieser GC, Sonstegard T, Schroeder SC,Lawrence ML (2015) Complete genome sequence of fish pathogen Aeromonas hydrophila AL06-06. Genome Announcements 3(2): e00368-15. DOI: 10.1128/genomeA.00368-15 • SCOPUS ID: 2-s2.0-85007507358 • SCOPUS CITATION COUNT: 15

Andersson L, Archibald AL, Bottema CD, Brauning R, Burgess SC, Burt DW, Casas E, Cheng HH, Clarke L, Couldrey C, Dalrymple BP, Elsik CG, Foissac S, Giuffra E, Groenen MA, Hayes BJ, Huang LS, Khatib H, Kijas JW, Kim H, Lunney JK, McCarthy FM, McEwan JC, Moore S, Nanduri B, Notredame C, Palti Y, Plastow GS, Reecy JM, Rohrer GA, Sarropoulou E, Schmidt CJ, Silverstein J, Tellam RL, Tixier-Boichard M, Tosser-Klopp G, Tuggle CK, Vilkki J, White SN, Zhao S, Zhou H (2015) Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biology 16: 57. DOI: 10.1186/s13059-015-0622-4 • SCOPUS ID: 2-s2.0-84935833067 • SCOPUS CITATION COUNT: 243

Perera D, Barnes DJ, Baldwin BS, Reichert NA (2015) Mutagenesis of in vitro cultures of Miscanthus x giganteus cultivar Freedom and detecting polymorphisms of regenerated plants using ISSR markers. Industrial Crops and Products 65: 110-116. DOI: 10.1016/j.indcrop.2014.12.005 • SCOPUS ID: 2-s2.0-84949117621 • SCOPUS CITATION COUNT: 21