Peer-Reviewed Publications

Novick PA, Smith JD, Ray DA, Boissinot S (2010) Independent and parallel lateral transfer of DNA transposons in tetrapod genomes. Gene 449(1-2): 85-94.

CiteScore: n/a • DOI: 10.1016/j.gene.2009.08.017 • PMID: 19747963 • SCOPUS ID: 2-s2.0-70350411861 • SCOPUS CITATION COUNT: 51

Jang Y, Wan XF (2010) Development of Chemical Bond based Elastic Network Model and its application in identifying functional motions in H5N1 highly pathogenic avian influenza viruses. International Journal of Bioinformatics Research and Applications 6(1): 1-11.

CiteScore: n/a • DOI: 10.1504/IJBRA.2010.031288 • PMID: 20110205 • SCOPUS ID: 2-s2.0-76249097254 • SCOPUS CITATION COUNT: 0

Soni KA, Nannapaneni R (2010) Bacteriophage significantly reduces Listeria monocytogenes on raw salmon fillet tissue. Journal of Food Protection 73(1): 32-38.

CiteScore: n/a • PMID: 20051201 • SCOPUS ID: 2-s2.0-75349090420 • SCOPUS CITATION COUNT: 95

Warnock JN, Gamez CA, Metzler SA, Chen J, Elder SH, Liao J (2010) Vasoactive agents alter the biomechanical properties of aortic heart valve leaflets in a time-dependent manner. Journal of Heart Valve Disease 19(1): 86-95.

CiteScore: n/a • PMID: 20329494 • SCOPUS ID: 2-s2.0-77950904148 • SCOPUS CITATION COUNT: 8

Nanduri B, Wang N, Lawrence ML, Bridges SM, Burgess SC (2010) Gene model detection using mass spectrometry. Methods in Molecular Biology 604: 137-144.

CiteScore: n/a • DOI: 10.1007/978-1-60761-444-9_10 • PMID: 20013369 • SCOPUS ID: 10.1016/j.ab.2016.09.016 • SCOPUS CITATION COUNT: 5

Ray DA, Han K, Walker JA, Batzer MA (2010) Laboratory methods for the analysis of primate mobile elements. Methods in Molecular Biology 628: 153-179.

CiteScore: n/a • DOI: 10.1007/978-1-60327-367-1_9 • PMID: 20238081 • SCOPUS ID: 2-s2.0-77952573756 • SCOPUS CITATION COUNT: 1

Berardini TZ, Li D, Huala E, Bridges SM, Burgess SC, McCarthy FM, Carbon S, Lewis SE, Mungall CJ, Abdulla A, Wood V, Feltrin E, Valle G, Chisholm RL, Fey P, Gaudet P, Kibbe W, Basu S, Bushmanova Y, Eilbeck K, Siegele DA, McIntosh B, Renfro D, Zweifel A, Hu JC, Ashburner M, Tweedie S, Alam-Faruque Y, Apweiler R, Auchinchloss A, Bairoch A, Barrell DG, Binns D, Blatter M, Bougueleret L, Boutet E, Breuza L, Bridge A, Browne P, Chan WM, Coudert E, Daugherty L, Dimmer E, Ebergardt R, Estreicer A, Famiglietti L, Ferro-Rojas S, Feuermann M, Foulger R, Gruaz-Gumowski N, Hinz U, Huntley R, Jimenez S, Jungo F, Keller G, Laiho K, Legge D, Lemercier P, Lieberherr D, Magrane M, O'Donovan C, Pedruzzi I, Poux S, Rivoire C, Roechert B, Sawford T, Schneider M, Stanley E, Stutz A, Sundaram S, Tognolli T, Xenarios I, Harris MA, Deegan JI, Ireland A, Lomax J, Jaiswal P, Chibucos M, Giglio MG, Wortman J, Hannick L, Madupu R, Botstein D, Dolinski K, Livstone MS, Oughtred R, Blake JA, Bult C, Diehl AD, Dolan M, Drabkin H, Eppig JT, Hill DP, Ni L, Ringwald M, Sitnikov D, Collmer C, Torto-Alalibo T, Laulederkind S, Shimoyama M, Twigger S, D'Eustachio P, Matthews L, Balakrishnan R, Binkley G, Cherry JM, Christie KR, Costanzo MC, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Hong EL, Krieger CJ, Miyasato SR, Nash RS, Park J, Skrzypek MS, Weng S, Wong ED, Aslett M, Chan J, Kishore R, Sternberg P, Van Auken K, Khodiyar VK, Lovering RC, Talmud PJ, Howe D, Westerfield M (2010) The Gene Ontology in 2010: extensions and refinements. Nucleic Acids Research 38(Database issue): D331-D335.

CiteScore: n/a • DOI: 10.1093/nar/gkp1018 • PMID: 19920128 • SCOPUS ID: 2-s2.0-75849158230 • SCOPUS CITATION COUNT: 392

Cooksey AM, Momen N, Stocker R, Burgess SC (2009) Identifying blood biomarkers and physiological processes that distinguish humans with superior performance under psychological stress. PLoS ONE 4(12): e8371.

CiteScore: n/a • DOI: 10.1371/journal.pone.0008371 • PMID: 20020041 • SCOPUS ID: 2-s2.0-77949512962 • SCOPUS CITATION COUNT: 3

Parvizi P, Read LR, Abdul-Careem MF, Sarson AJ, Lusty C, Lambourne M, Thanthrige-Don N, Burgess SC,Sharif S (2009) Cytokine gene expression in splenic CD4+ and CD8+ T cell subsets of genetically resistant and susceptible chickens infected with Marek's disease virus. Veterinary Immunology and Immunopathology 132(2-4): 209-217.

CiteScore: n/a • DOI: 10.1016/j.vetimm.2009.06.009 • PMID: 19615758 • SCOPUS ID: 2-s2.0-70449523556 • SCOPUS CITATION COUNT: 30

Kumar S, Buza JJ, Burgess SC (2009) Genotype-dependent tumor regression in Marek's disease mediated at the level of tumor immunity. Cancer Microenvironment 2(1): 23-31.

CiteScore: n/a • DOI: 10.1007/s12307-008-0018-z • PMID: 19308678 • SCOPUS ID: 2-s2.0-73449095218 • SCOPUS CITATION COUNT: 17

Sabanadzovic S, Abou Ghanem-Sabanadzovic N, Gorbalenya AE (2009) Permutation of the active site of putative RNA-dependent RNA polymerase in a newly identified species of plant alpha-like virus. Virology 394(1): 1-7.

CiteScore: n/a • DOI: 10.1016/j.virol.2009.08.006 • PMID: 19793602 • SCOPUS ID: 2-s2.0-70350125868 • SCOPUS CITATION COUNT: 46

Sabanadzovic S, Abou Ghanem-Sabanadzovic N (2009) Identification and molecular characterization of a marafivirus in Rubus spp. Archives of Virology 154(11): 1729-1735.

CiteScore: n/a • DOI: 10.1007/s00705-009-0510-x • PMID: 19784756 • SCOPUS ID: 2-s2.0-70350651278 • SCOPUS CITATION COUNT: 18

Ray DA, Platt RN, Batzer MA (2009) Reading between the LINEs to see into the past. Trends in Genetics 25(11): 475-479.

CiteScore: n/a • DOI: 10.1016/j.tig.2009.09.006 • PMID: 19837475 • SCOPUS ID: 2-s2.0-70350247354 • SCOPUS CITATION COUNT: 1

Bright LA, Burgess SC, Chowdhary B, Swiderski CE, McCarthy FM (2009) Structural and functional-annotation of an equine whole genome oligoarray. BMC Bioinformatics 10(Suppl 11): S8.

CiteScore: n/a • DOI: 10.1186/1471-2105-10-S11-S8 • PMID: 19811692 • SCOPUS CITATION COUNT: 18

Buza TJ, Kumar R, Gresham CR, Burgess SC, McCarthy FM (2009) Facilitating functional annotation of chicken microarray data. BMC Bioinformatics 10(Suppl 11): S2.

CiteScore: n/a • DOI: 10.1186/1471-2105-10-S11-S2 • PMID: 19811685 • SCOPUS CITATION COUNT: 9

Malone BM, Perkins AD, Bridges SM (2009) Integrating phenotype and gene expression data for predicting gene function. BMC Bioinformatics 10(Suppl 11): S20.

CiteScore: n/a • DOI: 10.1186/1471-2105-10-S11-S20 • PMID: 19811686 • SCOPUS CITATION COUNT: 8

Pendarvis K, Kumar R, Burgess SC, Nanduri B (2009) An automated proteomic data analysis workflow for mass spectrometry. BMC Bioinformatics 10(Suppl 11): S17.

CiteScore: n/a • DOI: 10.1186/1471-2105-10-S11-S17 • PMID: 19811682 • SCOPUS CITATION COUNT: 14

Perkins AD, Langston MA (2009) Threshold selection in gene co-expression networks using spectral graph theory techniques. BMC Bioinformatics 10(Suppl 11): S4.

CiteScore: n/a • DOI: 10.1186/1471-2105-10-S11-S4 • PMID: 19811688 • SCOPUS CITATION COUNT: 69

van den Berg BH, Thanthiriwatte C, Manda P, Bridges SM (2009) Comparing gene annotation enrichment tools for functional modeling of agricultural microarray data. BMC Bioinformatics 10(Suppl 11): S9.

CiteScore: n/a • DOI: 10.1186/1471-2105-10-S11-S9 • PMID: 19811693 • SCOPUS CITATION COUNT:

Holly C, Ervin G, Jackson CR, Diehl SV, Kirker GT (2008) Effect of an invasive grass on ambient rates of decompostion and microbial community structure: A search for causality. Biological Invasions 11(8): 1855-1868.

CiteScore: n/a • DOI: 10.1007/s10530-008-9364-5 • SCOPUS ID: 2-s2.0-70349504866 • SCOPUS CITATION COUNT: 17