Peer-Reviewed Publications

Blake JA, Dolan M, Drabkin H, Hill DP, Ni L, Sitnikov D, Burgess S, Buza T, Gresham C, McCarthy F, Pillai L, Wang H, Carbon S, Lewis SE, Mungall CJ, Gaudet P, Chisholm RL, Fey P, Kibbe WA, Basu S, Siegele DA, McIntosh BK, Renfro DP, Zweifel AE, Hu JC, Brown NH, Tweedie S, am-Faruque Y, Apweiler R, Auchinchloss A, Axelsen K, Argoud-Puy G, Bely B, Blatter MC, Bougueleret L, Boutet E, Branconi-Quintaje S, Breuza L, Bridge A, Browne P, Chan WM, Coudert E, Cusin I, Dimmer E, Duek-Roggli P, Eberhardt R, Estreicher A, Famiglietti L, Ferro-Rojas S, Feuermann M, Gardner M, Gos A, Gruaz-Gumowski N, Hinz U, Hulo C, Huntley R, James J, Jimenez S, Jungo F, Keller G, Laiho K, Legge D, Lemercier P, Lieberherr D, Magrane M, Martin MJ, Masson P, Moinat M, O'Donovan C, Pedruzzi I, Pichler K, Poggioli D, Porras Millan P, Poux S, Rivoire C, Roechert B, Sawford T, Schneider M, Sehra H, Stanley E, Stutz A, Sundaram S, Tognolli M, Xenarios I, Foulger R, Lomax J, Roncaglia P, Camon E, Khodiyar VK, Lovering RC, Talmud PJ, Chibucos M, Gwinn Giglio M, Dolinski K, Heinicke S, Livstone MS, Stephan R, Harris MA, Oliver SG, Rutherford K, Wood V, Bahler J, Lock A, Kersey PJ, McDowall MD, Staines DM, Dwinell M, Shimoyama M, Laulederkind S, Hayman T, Wang SJ, Petri V, Lowry T, D'Eustachio P, Matthews L, Amundsen CD, Balakrishnan R, Binkley G, Cherry JM, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Hong EL, Karra K, Krieger CJ, Miyasato SR, Nash RS, Park J, Skrzypek MS, Weng S, Wong ED, Berardini TZ, Li D, Huala E, Slonim D, Wick H, Thomas P, Chan J, Kishore R, Sternberg P, Van Auken K, Howe D, Westerfield M (2012) The Gene Ontology: Enhancements for 2011. Nucleic Acids Research 40(D1): D559-D564. DOI: 10.1093/nar/gkr1028 • SCOPUS ID: 2-s2.0-84859699831 • SCOPUS CITATION COUNT: 192

Meisenberg C, Tait PS, Dianova II, Wright K, Edelmann MJ, Ternette N, Tasaki T, Kessler BM, Parsons JL, Kwon YT, Dianov GL (2012) Ubiquitin ligase UBR3 regulates cellular levels of the essential DNA repair protein APE1 and is required for genome stability. Nucleic Acids Research 40(2): 701-711. DOI: 10.1093/nar/gkr744 • SCOPUS ID: 2-s2.0-84855871792 • SCOPUS CITATION COUNT: 47

Hoffmann FG, Opazo JC, Storz JF (2012) Whole-Genome Duplications Spurred the Functional Diversification of the Globin Gene Superfamily in Vertebrates. Molecular Biology and Evolution 29(1): 303-312. DOI: 10.1093/molbev/msr207 • SCOPUS ID: 2-s2.0-84861376715 • SCOPUS CITATION COUNT: 86

Villanueva F, Sabanadzovic S, Valverde RA, Navas-Castillo J (2012) Complete genome sequence of a double-stranded RNA virus from avocado. Journal of Virology 86(2): 1282-1283. DOI: 10.1128/JVI.06572-11 • SCOPUS ID: 2-s2.0-84856855832 • SCOPUS CITATION COUNT: 25

Storz JF, Natarajan C, Cheviron ZA, Hoffmann FG, Kelly JK (2012) Altitudinal Variation at Duplicated beta-Globin Genes in Deer Mice: Effects of Selection, Recombination, and Gene Conversion. Genetics 190(1): 203-216. DOI: 10.1534/genetics.111.134494 • SCOPUS ID: 2-s2.0-84855461402 • SCOPUS CITATION COUNT: 36

Pagan HJ, Macas J, Novak P, McCulloch ES, Stevens RD, Ray DA (2012) Survey sequencing reveals elevated DNA transposon activity, novel elements, and variation in repetitive landscapes among vesper bats. Genome Biology and Evolution 4(4): 575-585. DOI: 10.1093/gbe/evs038 • SCOPUS ID: 2-s2.0-84864081575 • SCOPUS CITATION COUNT: 34

Abou Ghanem-Sabanadzovic N, Sabanadzovic S, Gugerli P, Rowhani A (2012) Genome organization, serology and phylogeny of Grapevine leafroll-associated viruses 4 and 6: Taxonomic implications. Virus Research 163(1): 120-128. DOI: 10.1016/j.virusres.2011.09.001 • SCOPUS ID: 2-s2.0-84855614086 • SCOPUS CITATION COUNT: 41

Kumar R, Lawrence ML, Watt J, Cooksey AM, Burgess SC, Nanduri B (2012) RNA-seq based transcriptional map of bovine respiratory disease pathogen 'Histophilus somni 2336'. PLoS ONE 7(1): e29435. DOI: 10.1371/journal.pone.0029435 • SCOPUS ID: 2-s2.0-84856065621 • SCOPUS CITATION COUNT: 23

Pulikanti R, Peebles ED, Zhai W, Gerard PD (2012) Determination of embryonic temperature profiles and eggshell water vapor conductance constants in incubating Ross x Ross 708 broiler hatching eggs using temperature transponders. Poultry Science 91(1): 55-61. DOI: 10.3382/ps.2011-01759 • SCOPUS ID: 2-s2.0-83755207341 • SCOPUS CITATION COUNT: 9

Ross MK, Edelmann MJ (2012) Carboxylesterases: A Multifunctional Enzyme Involved in Pesticide and Lipid Metabolism. ACS Symposium Series 1099(10): 149-164. DOI: 10.1021/bk-2012-1099.ch010 • SCOPUS ID: 2-s2.0-84905665706 • SCOPUS CITATION COUNT: 9

Mejia L, Tillman PB, Zumwalt CD, Corzo A (2012) Assessment of the threonine-to-lysine ratio of male broilers from 35 to 49 days of age. Journal of Applied Poultry Research 21(2): 235-242. DOI: 10.3382/japr.2011-00344 • SCOPUS ID: 2-s2.0-84862283664 • SCOPUS CITATION COUNT: 7

Mejia L, Zumwalt CD, Tillman PB, Shirley RB, Corzo A (2012) Ratio needs of arginine relative to lysine of male broilers from 28 to 42 days of age during a constant, elevated environmental temperature regimen. Journal of Applied Poultry Research 21(2): 305-310. DOI: 10.3382/japr.2011-00397 • SCOPUS ID: 2-s2.0-84862280774 • SCOPUS CITATION COUNT: 6

David Y, Ternette N, Edelmann MJ, Ziv T, Gayer B, Sertchook R, Dadon Y, Kessler BM, Navon A (2011) E3 ligases determine ubiquitination site and conjugate type by enforcing specificity on E2 enzymes. Journal of Biological Chemistry 286(51): 44104-44115. DOI: 10.1074/jbc.M111.234559 • SCOPUS ID: 2-s2.0-82955177713 • SCOPUS CITATION COUNT: 53

Hines HM, Counterman BA, Papa R, Albuquerque de Moura P, Cardoso MZ, Linares M, Mallet J, Reed RD, Jiggins CD, Kronforst MR,McMillan WO (2011) Wing patterning gene redefines the mimetic history of Heliconius butterflies. Proceedings of the National Academy of Sciences of the United States of America 108(49): 19666-71. DOI: 10.1073/pnas.1110096108 • SCOPUS ID: 2-s2.0-83755207336 • SCOPUS CITATION COUNT: 93

Wan XF, Dong L, Lan Y, Long LP, Xu C, Zou S, Li Z, Wen L, Cai Z, Wang W, Li X, Yuan F, Sui H, Zhang Y, Dong J, Sun S, Gao Y, Wang M, Bai T, Yang L, Li D, Yang W, Yu H, Wang S, Feng Z, Wang Y, Guo Y, Webby RJ,Shu Y (2011) Indications that live poultry markets are a major source of human H5N1 influenza virus infection in China. Journal of Virology 85(24): 13432-13438. DOI: 10.1128/JVI.05266-11 • SCOPUS ID: 2-s2.0-84862907737 • SCOPUS CITATION COUNT: 134

Coombes RH, Crow JA, Dail MB, Chambers HW, Wills RW, Bertolet BD, Chambers JE (2011) Relationship of human paraoxonase-1 serum activity and genotype with atherosclerosis in individuals from the Deep South. Pharmacogenetics and Genomics 21(12): 867-875. DOI: 10.1097/FPC.0b013e32834cebc6 • SCOPUS ID: 2-s2.0-81055156099 • SCOPUS CITATION COUNT: 16

Bhatty M, Jan BL, Tan W, Pruett SB, Nanduri B (2011) Role of acute ethanol exposure and TLR4 in early events of sepsis in a mouse model. Alcohol 45(8): 795-803. DOI: 10.1016/j.alcohol.2011.07.003 • SCOPUS ID: 2-s2.0-81055140453 • SCOPUS CITATION COUNT: 26

Zhai W, Bennett LW, Gerard PD, Pulikanti R, Peebles ED (2011) Effects of in ovo injection of carbohydrates on somatic characteristics and liver nutrient profiles of broiler embryos and hatchlings. Poultry Science 90(12): 2681-2688. DOI: 10.3382/ps.2011-01532 • SCOPUS ID: 2-s2.0-81555218475 • SCOPUS CITATION COUNT: 35

Edelmann MJ, Nicholson B, Kessler BM (2011) Pharmacological targets in the ubiquitin system offer new ways of treating cancer, neurodegenerative disorders and infectious diseases. Expert Reviews in Molecular Medicine 13: e35. DOI: 10.1017/S1462399411002031 • SCOPUS ID: 2-s2.0-84857085837 • SCOPUS CITATION COUNT: 91

Liu W, Thummasuwan S, Sehgal SK, Chouvarine P, Peterson DG (2011) Characterization of the genome of bald cypress. BMC Genomics 12: 553. DOI: 10.1186/1471-2164-12-553 • SCOPUS ID: 2-s2.0-81055149810 • SCOPUS CITATION COUNT: 24