Peer-Reviewed Publications

Outlaw DC, Ricklefs RE (2011) Rerooting the evolutionary tree of malaria parasites. Proceedings of the National Academy of Sciences of the United States of America 108(32): 13183-13187. DOI: 10.1073/pnas.1109153108 • SCOPUS ID: 2-s2.0-80051960846 • SCOPUS CITATION COUNT: 63

Bright LA, Mujahid N, Nanduri B, McCarthy FM, Costa LR, Burgess SC, Swiderski CE (2011) Functional modelling of an equine bronchoalveolar lavage fluid proteome provides experimental confirmation and functional annotation of equine genome sequences. Animal Genetics 42(4): 395-405. DOI: 10.1111/j.1365-2052.2010.02158.x • SCOPUS ID: 2-s2.0-79960363654 • SCOPUS CITATION COUNT: 8

Soni KA, Nannapaneni R, Tasara T (2011) The contribution of transcriptomic and proteomic analysis in elucidating stress adaptation responses of Listeria monocytogenes. Foodborne Pathogens and Disease 8(8): 843-852. DOI: 10.1089/fpd.2010.0746 • SCOPUS ID: 2-s2.0-79960552251 • SCOPUS CITATION COUNT: 66

Warnock JN, Nanduri B, Pregonero Gamez CA, Tang J, Koback D, Muir WM, Burgess SC (2011) Gene Profiling of Aortic Valve Interstitial Cells under Elevated Pressure Conditions: Modulation of Inflammatory Gene Networks. International Journal of Inflammation 2011: 176412. DOI: 10.4061/2011/176412 • SCOPUS CITATION COUNT:

Castoe TA, de Koning JA, Hall KT, Yokoyama KD, Gu W, Smith EN, Feschotte C, Uetz P, Ray DA, Dobry J, Bogden R, Mackessy SP, Bronikowski AM, Warren WC, Secor SM, Pollock DD (2011) Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes. Genome Biology 12(7): 406. DOI: 10.1186/gb-2011-12-7-406 • SCOPUS ID: 2-s2.0-79960891921 • SCOPUS CITATION COUNT: 54

Song G, Hsu CH, Riemer C, Zhang Y, Kim HL, Hoffmann FG, Zhang L, Hardison RC, Green ED, Miller W (2011) Conversion events in gene clusters. BMC Evolutionary Biology 11: 226. DOI: 10.1186/1471-2148-11-226 • SCOPUS ID: 2-s2.0-79960653555 • SCOPUS CITATION COUNT: 11

Moolhuijzen PM, Lew-Tabor AE, Morgan JA, Valle MR, Peterson DG, Dowd SE, Guerrero FD, Bellgard MI, Appels R (2011) The complexity of Rhipicephalus (Boophilus) microplus genome characterised through detailed analysis of two BAC clones. BMC Research Notes 4: 254. DOI: 10.1186/1756-0500-4-254 • SCOPUS ID: 2-s2.0-79960565948 • SCOPUS CITATION COUNT: 8

Scott VL, Shack LA, Eells JB, Ryan PL, Donaldson JR, Coats KS (2011) Immunomodulator expression in trophoblasts from the feline immunodeficiency virus (FIV)-infected cat. Virology Journal 8: 336. DOI: 10.1186/1743-422X-8-336 • SCOPUS ID: 2-s2.0-79959838779 • SCOPUS CITATION COUNT: 10

Adams JP, Adeli A, Hsu CY, Harkess RL, Page GP, dePamphilis CW, Schultz EB,Yuceer C (2011) Poplar maintains zinc homeostasis with heavy metal genes HMA4 and PCS1. Journal of Experimental Botany 62(11): 3737-3752. DOI: 10.1093/jxb/err025 • SCOPUS ID: 2-s2.0-79960542625 • SCOPUS CITATION COUNT: 51

Sanders WS, Johnston CI, Bridges SM, Burgess SC, Willeford KO (2011) Prediction of cell penetrating peptides by support vector machines. PLoS Computational Biology 7(7): e1002101. DOI: 10.1371/journal.pcbi.1002101 • SCOPUS ID: 2-s2.0-81055126634 • SCOPUS CITATION COUNT: 135

Steele CL, Donaldson JR, Paul D, Banes MM, Arick T, Bridges SM, Lawrence ML (2011) Genome sequence of lineage III Listeria monocytogenes strain HCC23. Journal of Bacteriology 193(14): 3679-3680. DOI: 10.1128/JB.05236-11 • SCOPUS ID: 2-s2.0-79960415166 • SCOPUS CITATION COUNT: 23

Zhang G, Kong W, Qi W, Long LP, Cao Z, Huang L, Qi H, Cao N, Wang W, Zhao F, Ning Z, Liao M,Wan XF (2011) Identification of an H6N6 swine influenza virus in southern China. Infection, Genetics and Evolution 11(5): 1174-1177. DOI: 10.1016/j.meegid.2011.02.023 • SCOPUS ID: 2-s2.0-79956302535 • SCOPUS CITATION COUNT: 73

Bernhardt V, Garcia-Reyero N, Vovk A, Denslow N, Davenport PW (2011) Tracheal occlusion modulates the gene expression profile of the medial thalamus in anesthetized rats. Frontiers in Physiology 111(1): 117-124. DOI: 10.1152/japplphysiol.01317.2010 • SCOPUS ID: 2-s2.0-79960265210 • SCOPUS CITATION COUNT: 8

Bowser JE, Elder SH, Rashmir-Raven AM, Swiderski CE (2011) A cryogenic clamping technique that facilitates ultimate tensile strength determinations in tendons and ligaments. Veterinary and Comparative Orthopaedics and Traumatology 24(5): 370-373. DOI: 10.3415/VCOT-10-09-0128 • SCOPUS ID: 2-s2.0-80053042362 • SCOPUS CITATION COUNT: 18

Hsu CY, Adams JP, Kim H, No K, Ma C, Strauss SH, Drnevich J, Vandervelde L, Ellis JD, Rice BM, Wickett N, Gunter LE, Tuskan GA, Brunner AM, Page GP, Barakat A, Carlson JE, DePamphilis CW, Luthe DS,Yuceer C (2011) FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar. Proceedings of the National Academy of Sciences of the United States of America 108(26): 10756-61. DOI: 10.1073/pnas.1104713108 • SCOPUS ID: 2-s2.0-79960615345 • SCOPUS CITATION COUNT: 362

Ray DA, Batzer MA (2011) Reading TE leaves: new approaches to the identification of transposable element insertions. Genome Research 21(6): 813-820. DOI: 10.1101/gr.110528.110 • SCOPUS ID: 2-s2.0-79957942181 • SCOPUS CITATION COUNT: 36

Skolness SY, Durhan EJ, Garcia-Reyero N, Jensen KM, Kahl MD, Makynen EA, Martinovic-Weigelt D, Perkins E, Villeneuve DL, Ankley GT (2011) Effects of a short-term exposure to the fungicide prochloraz on endocrine function and gene expression in female fathead minnows (Pimephales promelas). Aquatic Toxicology 103(3-4): 170-178. DOI: 10.1016/j.aquatox.2011.02.016 • SCOPUS ID: 2-s2.0-79953256944 • SCOPUS CITATION COUNT: 59

Meganathan PR, Dubey B, Batzer MA, Ray DA, Haque I (2011) Complete mitochondrial genome sequences of three Crocodylus species and their comparison within the Order Crocodylia. Gene 478(1-2): 35-41. DOI: 10.1016/j.gene.2011.01.012 • SCOPUS ID: 2-s2.0-79955012355 • SCOPUS CITATION COUNT: 23

Kessler BM, Edelmann MJ (2011) PTMs in conversation: activity and function of deubiquitinating enzymes regulated via post-translational modifications. Cell Biochemistry and Biophysics 60(1-2): 21-38. DOI: 10.1007/s12013-011-9176-6 • SCOPUS ID: 2-s2.0-79955941973 • SCOPUS CITATION COUNT: 71

Pulikanti R, Peebles ED, Gerard PD (2011) Use of implantable temperature transponders for the determination of air cell temperature, eggshell water vapor conductance, and their functional relationships in embryonated broiler hatching eggs. Poultry Science 90(6): 1191-1196. DOI: 10.3382/ps.2010-01191 • SCOPUS ID: 2-s2.0-79957528079 • SCOPUS CITATION COUNT: 14