Peer-Reviewed Publications

Pagan HJ, Smith JD, Hubley RM, Ray DA (2010) PiggyBac-ing on a primate genome: novel elements, recent activity and horizontal transfer. Genome Biology and Evolution 2: 293-303. DOI: 10.1093/gbe/evq021 • SCOPUS ID: 2-s2.0-77958455491 • SCOPUS CITATION COUNT: 32

Ricklefs RE, Outlaw DC (2010) A molecular clock for malaria parasites. Science 329(5988): 226-229. DOI: 10.1126/science.1188954 • SCOPUS ID: 2-s2.0-77954593415 • SCOPUS CITATION COUNT: 122

Thanthrige-Don N, Parvizi P, Sarson AJ, Shack LA, Burgess SC, Sharif S (2010) Proteomic analysis of host responses to Marek's disease virus infection in spleens of genetically resistant and susceptible chickens. Developmental and Comparative Immunology 34(7): 699-704. DOI: 10.1016/j.dci.2010.01.016 • SCOPUS ID: 2-s2.0-77951497932 • SCOPUS CITATION COUNT: 21

Keralapurath MM, Corzo A, Pulikanti R, Zhai W, Peebles ED (2010) Effects of in ovo injection of L-carnitine on hatchability and subsequent broiler performance and slaughter yield. Poultry Science 89(7): 1497-1501. DOI: 10.3382/ps.2009-00551 • SCOPUS ID: 2-s2.0-77955868879 • SCOPUS CITATION COUNT: 46

Shoemaker JE, Gayen K, Garcia-Reyero N, Perkins EJ, Villeneuve DL, Liu L, Doyle FJ (2010) Fathead minnow steroidogenesis: in silico analyses reveals tradeoffs between nominal target efficacy and robustness to cross-talk. BMC Systems Biology 4: 89. DOI: 10.1186/1752-0509-4-89 • SCOPUS ID: 2-s2.0-77953922688 • SCOPUS CITATION COUNT: 19

Lin L, Pierce GJ, Bowers JE, Estill JC, Compton RO, Rainville LK, Kim C, Lemke C, Rong J, Tang H, Wang X, Braidotti M, Chen AH, Chicola K, Collura K, Epps E, Golser W, Grover C, Ingles J, Karunakaran S, Kudrna D, Olive J, Tabassum N, Um E, Wissotski M, Yu Y, Zuccolo A, ur Rahman M, Peterson DG, Wing RA, Wendel JF, Paterson AH (2010) A draft physical map of a D-genome cotton species (Gossypium raimondii). BMC Genomics 11: 395. DOI: 10.1186/1471-2164-11-395 • SCOPUS ID: 2-s2.0-77953663537 • SCOPUS CITATION COUNT: 48

Peddinti DS, Memili E, Burgess SC (2010) Proteomics-based systems biology modeling of bovine germinal vesicle stage oocyte and cumulus cell interaction. PLoS ONE 5(6): e11240. DOI: 10.1371/journal.pone.0011240 • SCOPUS ID: 2-s2.0-77955299202 • SCOPUS CITATION COUNT: 40

Guerrero FD, Moolhuijzen P, Peterson DG, Bidwell S, Caler E, Bellgard MI, Nene VM, Djikeng A (2010) Reassociation kinetics-based approach for partial genome sequencing of the cattle tick, Rhipicephalus (Boophilus) microplus. BMC Genomics 11: 374. DOI: 10.1186/1471-2164-11-374 • SCOPUS ID: 2-s2.0-77953299234 • SCOPUS CITATION COUNT: 30

Brooks CP, Zhang H (2010) A null model of community disassembly effects on vector-borne disease risk. Journal of Theoretical Biology 264(3): 866-873. DOI: 10.1016/j.jtbi.2010.03.016 • SCOPUS ID: 2-s2.0-77952669273 • SCOPUS CITATION COUNT: 16

Dumpala PR, Gulsoy N, Lawrence ML, Karsi A (2010) Proteomic analysis of the fish pathogen Flavobacterium columnare. Proteome Science 8: 26. DOI: 10.1186/1477-5956-8-26 • SCOPUS ID: 2-s2.0-77954166344 • SCOPUS CITATION COUNT: 21

Kumar R, Shah P, Swiatlo E, Burgess SC, Lawrence ML, Nanduri B (2010) Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays. BMC Genomics 11: 350. DOI: 10.1186/1471-2164-11-350 • SCOPUS ID: 2-s2.0-77952987152 • SCOPUS CITATION COUNT: 60

Zhang H, Harry DE, Ma C, Yuceer C, Hsu CY, Vikram V, Shevchenko O, Etherington E,Strauss SH (2010) Precocious flowering in trees: the FLOWERING LOCUS T gene as a research and breeding tool in Populus. Journal of Experimental Botany 61(10): 2549-2560. DOI: 10.1093/jxb/erq092 • SCOPUS ID: 2-s2.0-77954736020# • SCOPUS CITATION COUNT:

Sekhon RK, Schilling MW, Phillips TW, Aikins RM, Hasan MM, Nannapaneni R, Mikel WB (2010) Effects of carbon dioxide and ozone treatments on the volatile composition and sensory quality of dry-cured ham. Journal of Food Science 75(5): C452-C458. DOI: 10.1111/j.1750-3841.2010.01646.x • SCOPUS ID: 2-s2.0-77956122821 • SCOPUS CITATION COUNT: 27

Chen BY, Pyla R, Kim TJ, Silva JL, Jung YS (2010) Antibiotic resistance in Listeria species isolated from catfish fillets and processing environment. Letters in Applied Microbiology 50(6): 626-632. DOI: 10.1111/j.1472-765X.2010.02843.x • SCOPUS ID: 2-s2.0-77952211439 • SCOPUS CITATION COUNT: 61

van den Berg BH, McCarthy FM, Lamont SJ, Burgess SC (2010) Re-annotation is an essential step in systems biology modeling of functional genomics data. PLoS ONE 5(5): e10642. DOI: 10.1371/journal.pone.0010642 • SCOPUS ID: 2-s2.0-77956499698 • SCOPUS CITATION COUNT: 21

Katam R, Basha SM, Suravajhala P, Pechan T (2010) Analysis of peanut leaf proteome. Journal of Proteome Research 9(5): 2236-2254. DOI: 10.1021/pr901009n • SCOPUS ID: 2-s2.0-77952026970 • SCOPUS CITATION COUNT: 36

Hoffmann FG, Storz JF, Gorr TA, Opazo JC (2010) Lineage-specific patterns of functional diversification in the alpha- and beta-globin gene families of tetrapod vertebrates. Molecular Biology and Evolution 27(5): 1126-1138. DOI: 10.1093/molbev/msp325 • SCOPUS ID: 2-s2.0-77951546469 • SCOPUS CITATION COUNT: 61

Pulikanti R, Peebles ED, Keirs RW, Bennett LW, Keralapurath MM, Gerard PD (2010) Pipping muscle and liver metabolic profile changes and relationships in broiler embryos on days 15 and 19 of incubation. Poultry Science 89(5): 860-865. DOI: 10.3382/ps.2009-00531 • SCOPUS ID: 2-s2.0-77953107266 • SCOPUS CITATION COUNT: 31

Paterson AH, Rong J, Gingle AR, Chee PW, Dennis ES, Llewellyn D, Dure LS, Haigler C, Myers G, Peterson DG, Rahman M, Zafar Y, Reddy U, Saranga Y, Stewart JM, Udall JA, Waghmare VN, Wendel JF, Wilkins TA, Wright RJ, Zaki E, Hafez EE, Zhu J (2010) Sequencing and utilization of the Gossypium genomes. Tropical Plant Biology 3: 71-74. DOI: 10.1007/s12042-010-9051-4 • SCOPUS ID: 2-s2.0-77952583266 • SCOPUS CITATION COUNT: 8

Soni KA, Nannapaneni R, Hagens S (2010) Reduction of Listeria monocytogenes on the surface of fresh channel catfish fillets by bacteriophage Listex P100. Foodborne Pathogens and Disease 7(4): 427-434. DOI: 10.1089/fpd.2009.0432 • SCOPUS ID: 2-s2.0-77950564954 • SCOPUS CITATION COUNT: 120