Peer-Reviewed Publications

Ray DA, Batzer MA (2011) Reading TE leaves: new approaches to the identification of transposable element insertions. Genome Research 21(6): 813-820.

CiteScore: 24.6 • DOI: 10.1101/gr.110528.110 • PMID: 21632748 • SCOPUS ID: 2-s2.0-79957942181 • SCOPUS CITATION COUNT: 34

Wan H, Gao J, Yang H, Yang S, Harvey R, Chen Y-Q, Zheng N-Y, Chang J, Carney PJ, Li X, Plant E, Jiang L, Couzens L, Wang C, Strohmeier S, Wu WW, Shen R-F, Krammer F, Cipollo JF, Wilson PC, Stevens J, Wan X-F, Eichelberger MC, Ye Z (2019) The neuraminidase of A(H3N2) influenza viruses circulating since 2016 is antigenically distinct from the A/Hong Kong/4801/2014 vaccine strain. Nature Microbiology 4(12): 2216-2225.

CiteScore: 23.2 • DOI: 10.1038/s41564-019-0522-6 • PMID: 31406333 • SCOPUS ID: 2-s2.0-85070811090 • SCOPUS CITATION COUNT: 43

Burki F, Roger AJ, Brown MW, Simpson AGB (2020) The New Tree of Eukaryotes. Trends in Ecology and Evolution 35(1): 43-55.

CiteScore: 22.3 • DOI: 10.1016/j.tree.2019.08.008 • PMID: 31606140 • SCOPUS ID: 2-s2.0-85073068371 • SCOPUS CITATION COUNT: 425

Rice ES, Kohno S, John JS, Pham S, Howard J, Lareau LF, O'Connell BL, Hickey G, Armstrong J, Deran A, Fiddes I, Platt 2nd RN, Gresham C, McCarthy F, Kern C, Haan D, Phan T, Schmidt C, Sanford JR, Ray DA, Paten B, Guillette Jr LJ , Green RE (2017) Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling. Genome Research 27(5): 686-696.

CiteScore: 22 • DOI: 10.1101/gr.213595.116 • PMID: 28137821 • SCOPUS ID: 2-s2.0-85019162877 • SCOPUS CITATION COUNT: 31

Salomaki ED, Eme L, Brown MW, Kolisko M (2020) Releasing uncurated datasets is essential for reproducible phylogenomics. Nature Ecology and Evolution 4(11): 1435-1437.

CiteScore: 21.1 • DOI: 10.1038/s41559-020-01296-w • PMID: 32884150 • SCOPUS ID: 2-s2.0-85090152222 • SCOPUS CITATION COUNT: 8

Wen F, Wan X-F (2019) Influenza Neuraminidase: Underrated Role in Receptor Binding. Trends in Microbiology 27(6): 477-479.

CiteScore: 20.5 • DOI: 10.1016/j.tim.2019.03.001 • PMID: 30930001 • SCOPUS ID: 2-s2.0-85063387328 • SCOPUS CITATION COUNT: 30

Yubuki N, Galindo LJ, Reboul G, López-García P, Brown MW, Pollet N, Moreira D (2020) Ancient Adaptive Lateral Gene Transfers in the Symbiotic Opalina-Blastocystis Stramenopile Lineage. Molecular Biology and Evolution 37(3): 651-659.

CiteScore: 19.8 • DOI: 10.1093/molbev/msz250 • PMID: 31693153 • SCOPUS ID: 2-s2.0-85081108741 • SCOPUS CITATION COUNT: 5

Yang J, Grunewald S, Wan XF (2013) Quartet-net: a quartet-based method to reconstruct phylogenetic networks. Molecular Biology and Evolution 30(5): 1206-1217.

CiteScore: 19 • DOI: 10.1093/molbev/mst040 • PMID: 23493256 • SCOPUS ID: 2-s2.0-84876520073 • SCOPUS CITATION COUNT: 23

Opazo JC, Butts GT, Nery MF, Storz JF, Hoffmann FG (2013) Whole-genome duplication and the functional diversification of teleost fish hemoglobins. Molecular Biology and Evolution 30(1): 140-153.

CiteScore: 19 • DOI: 10.1093/molbev/mss212 • PMID: 22949522 • SCOPUS ID: 2-s2.0-84871836802 • SCOPUS CITATION COUNT: 76

Opazo JC, Lee AP, Hoffmann FG, Toloza-Villalobos J, Burmester T, Venkatesh B, Storz JF (2015) Ancient Duplications and Expression Divergence in the Globin Gene Superfamily of Vertebrates: Insights from the Elephant Shark Genome and Transcriptome. Molecular Biology and Evolution 32(7): 1684-1694.

CiteScore: 18.4 • DOI: 10.1093/molbev/msv054 • PMID: 25743544 • SCOPUS ID: 2-s2.0-84936858438 • SCOPUS CITATION COUNT: 32

Opazo JC, Hoffmann FG, Natarajan C, Witt CC, Berenbrink M,Storz JF (2015) Gene turnover in the avian globin gene families and evolutionary changes in hemoglobin isoform expression. Molecular Biology and Evolution 32(4): 871-87.

CiteScore: 18.4 • DOI: 10.1093/molbev/msu341 • PMID: 25502940 • SCOPUS ID: 2-s2.0-84988304467 • SCOPUS CITATION COUNT: 39

Natarajan C, Hoffmann FG, Lanier HC, Wolf CJ, Cheviron ZA, Spangler ML, Weber RE, Fago A, Storz JF (2015) Intraspecific Polymorphism, Interspecific Divergence, and the Origins of Function-Altering Mutations in Deer Mouse Hemoglobin. Molecular Biology and Evolution 32(4): 978-997.

CiteScore: 18.4 • DOI: 10.1093/molbev/msu403 • PMID: 25556236 • SCOPUS ID: 2-s2.0-84926654384 • SCOPUS CITATION COUNT: 79

Calisher CH, Briese T, Brister JR, Charrel RN, Durrwald R, Ebihara H, Fulhorst CF, Gao GF, Groschup MH, Haddow AD, Hyndman TH, Junglen S, Klempa B, Klingstrom J, Kropinski AM, Krupovic M, Labeaud AD, Maes P, Nowotny N, Nunes MRT, Payne SL, Radoshitzky SR, Rubbenstroth D, Sabanadzovic S, Sasaya T, Stenglein MD, Varsani A, Wahl V, Weaver SC, Zerbini FM, Vasilakis N, Kuhn JH (2019) Strengthening the Interaction of the Virology Community with the International Committee on Taxonomy of Viruses (ICTV) by Linking Virus Names and Their Abbreviations to Virus Species. Systematic Biology 68(5): 828-839.

CiteScore: 17.8 • DOI: 10.1093/sysbio/syy087 • PMID: 30597118 • SCOPUS ID: 2-s2.0-85071482283 • SCOPUS CITATION COUNT: 9

Lindsay KE, Vanover D, Thoresen M, King H, Xiao P, Badial P, Araínga M, Park SB, Tiwari PM, Peck HE, Blanchard EL, Feugang JM, Olivier AK, Zurla C, Villinger F, Woolums AR, Santangelo PJ (2020) Aerosol Delivery of Synthetic mRNA to Vaginal Mucosa Leads to Durable Expression of Broadly Neutralizing Antibodies against HIV. Molecular Therapy 28(3): 805-819.

CiteScore: 17.7 • DOI: 10.1016/j.ymthe.2020.01.002 • PMID: 31995741 • SCOPUS ID: 2-s2.0-85078471165 • SCOPUS CITATION COUNT: 29

Blake JA, Christie KR, Dolan ME, Drabkin HJ, Hill DP, Ni L, Sitnikov D, Burgess S, Buza T, Gresham C, McCarthy F, Pillai L, Wang H, Carbon S, Dietze H, Lewis SS, Mungall CJ, Munoz-Torres MC, Feuermann M, Gaudet P, Basu S, Chisholm RL, Dodson RJ, Fey P, Mi H, Thomas PD, Muruganujan A, Poudel S, Hu J, Aleksander SA, McIntosh BK, Renfro DP, Siegele DA, Attrill H, Brown NH, Tweedie S, Lomax J, Osumi-Sutherland D, Parkinson H, Roncaglia P, Lovering RC, Talmud PJ, Humphries SE, Denny P, Campbell NH, Foulger RE, Chibucos MC, Gwinn Giglio M, Chang HY, Finn R, Fraser M, Mitchell A, Nuka G, Pesseat S, Sangrador A, Scheremetjew M, Young SY, Stephan R, Harris MA, Oliver SG, Rutherford K, Wood V, Bahler J, Lock A, Kersey PJ, McDowall MD, Staines DM, Dwinell M, Shimoyama M, Laulederkind S, Hayman GT, Wang SJ, Petri V, D'Eustachio P, Matthews L, Balakrishnan R, Binkley G, Cherry JM, Costanzo MC, Demeter J, Dwight SS, Engel SR, Hitz BC, Inglis DO, Lloyd P, Miyasato SR, Paskov K, Roe G, Simison M, Nash RS, Skrzypek MS, Weng S, Wong ED, Berardini TZ, Li D, Huala E, Argasinska J, Arighi C, Auchincloss A, Axelsen K, Argoud-Puy G, Bateman A, Bely B, Blatter MC, Bonilla C, Bougueleret L, Boutet E, Breuza L, Bridge A, Britto R, Casals C, Cibrian-Uhalte E, Coudert E, Cusin I, Duek-Roggli P, Estereicher A, Famiglietti L, Gane P, Garmiri P, Gos A, Gruaz-Gumowski N, Hatton-Ellis E, Hinz U, Hulo C, Huntley R, Jungo F, Keller G, Laiho K, Lemercier P, Lieberherr D, MacDougall A, Magrane M, Martin M, Masson P, Mutowo P, O'Donovan C, Pedruzzi I, Pichler K, Poggioli D, Poux S, Rivoire C, Roechert B, Sawford T, Schneider M, Shypitsyna A, Stutz A, Sundaram S, Tognolli M, Wu C, Xenarios I, Chan J, Kishore R, Sternberg PW, Van Auken K, Muller HM, Done J, Li Y, Howe D, Westerfield M (2015) Gene Ontology Consortium: going forward. Nucleic Acids Research 43(Database issue): D1049-D1056.

CiteScore: 17.7 • DOI: 10.1093/nar/gku1179 • PMID: 25428369 • SCOPUS ID: 2-s2.0-84946735654 • SCOPUS CITATION COUNT: 2278

Castoe TA, de Koning APJ, Hall KT, Card DC, Shield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, Polanco D, Dobry J, Vandewege MW, Li Q, Schott RK, Kapusta A, Minx P, Feschotte C, Uetz P, Ray DA, Hoffmann FG, Bogden R, Smith EN, Chang BSW, Vonk FJ, Casewell NR, Henkel CV, Richardson MK, Mackessy SP, Bronikowsi AM, Yandell M, Warren WC, Secor SM, Pollock DD (2013) The Burmese python genome reveals the molecular basis for extreme adaptation in snakes. Proceedings of the National Academy of Sciences of the United States of America 110(51): 20645-20650.

CiteScore: 17.4 • DOI: 10.1073/pnas.1314475110 • PMID: 24297902 • SCOPUS ID: 2-s2.0-84890812848 • SCOPUS CITATION COUNT: 215

Martin A, Papa R, Nadeau NJ, Hill RI, Counterman BA, Halder G, Jiggins CD, Kronforst MR, Long AD, McMillan WO, Reed RD (2012) Diversification of complex butterfly wing patterns by repeated regulatory evolution of a Wnt ligand. Proceedings of the National Academy of Sciences of the United States of America 109(31): 12632-12637.

CiteScore: 17.3 • DOI: 10.1073/pnas.1204800109 • PMID: 22802635 • SCOPUS ID: 2-s2.0-84864508428 • SCOPUS CITATION COUNT: 188

Ricklefs RE, Outlaw DC, Svensson-Coelho M, Medeiros MC, Ellis VA, Latta S (2014) Species formation by host shifting in avian malaria parasites. Proceedings of the National Academy of Sciences of the United States of America 111(41): 14816-14821.

CiteScore: 17.2 • DOI: 10.1073/pnas.1416356111 • PMID: 25271324 • SCOPUS ID: 2-s2.0-84907938532 • SCOPUS CITATION COUNT: 110

Hines HM, Counterman BA, Papa R, Albuquerque de Moura P, Cardoso MZ, Linares M, Mallet J, Reed RD, Jiggins CD, Kronforst MR,McMillan WO (2011) Wing patterning gene redefines the mimetic history of Heliconius butterflies. Proceedings of the National Academy of Sciences of the United States of America 108(49): 19666-71.

CiteScore: 16.8 • DOI: 10.1073/pnas.1110096108 • SCOPUS ID: 2-s2.0-83755207336 • SCOPUS CITATION COUNT: 89

La H, Ding B, Mishra GP, Zhou B, Yang H, Bellizzi Mdel R, Chen S, Meyers BC, Peng Z, Zhu JK,Wang GL (2011) A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice. Proceedings of the National Academy of Sciences of the United States of America 108(37): 15498-15503.

CiteScore: 16.8 • DOI: 10.1073/pnas.1112704108 • PMID: 21896764 • SCOPUS ID: 2-s2.0-80053065324 • SCOPUS CITATION COUNT: 77