Peer-Reviewed Publications

Kunec D, Nanduri B, Burgess SC (2009) Experimental annotation of channel catfish virus by probabilistic proteogenomic mapping. Proteomics 9(10): 2634-2647.

CiteScore: n/a • DOI: 10.1002/pmic.200800397 • PMID: 19391180 • SCOPUS ID: 2-s2.0-66449118774 • SCOPUS CITATION COUNT: 20

Feugang JM, Kaya A, Page GP, Chen L, Mehta T, Hirani K, Nazareth L, Topper E, Gibbs R, Memili E (2009) Two-stage genome-wide association study identifies integrin beta 5 as having potential role in bull fertility. BMC Genomics 10: 176.

CiteScore: n/a • DOI: 10.1186/1471-2164-10-176 • PMID: 19393042 • SCOPUS ID: 2-s2.0-65649152280 • SCOPUS CITATION COUNT: 70

Rodriguez-Osorio N, Wang Z, Kasinathan P, Page GP, Robl JM, Memili E (2009) Transcriptional reprogramming of gene expression in bovine somatic cell chromatin transfer embryos. BMC Genomics 10: 190.

CiteScore: n/a • DOI: 10.1186/1471-2164-10-190 • PMID: 19393066 • SCOPUS ID: 2-s2.0-65649126673 • SCOPUS CITATION COUNT: 30

Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigo R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, Nicholas FW, Reymond A, Rijnkels M, Skow LC, Zdobnov EM, Schook L, Womack J, Alioto T, Antonarakis SE, Astashyn A, Chapple CE, Chen HC, Chrast J, Camara F, Ermolaeva O, Henrichsen CN, Hlavina W, Kapustin Y, Kiryutin B, Kitts P, Kokocinski F, Landrum M, Maglott D, Pruitt K, Sapojnikov V, Searle SM, Solovyev V, Souvorov A, Ucla C, Wyss C, Anzola JM, Gerlach D, Elhaik E, Graur D, Reese JT, Edgar RC, McEwan JC, Payne GM, Raison JM, Junier T, Kriventseva EV, Eyras E, Plass M, Donthu R, Larkin DM, Reecy J, Yang MQ, Chen L, Cheng Z, Chitko-McKown CG, Liu GE, Matukumalli LK, Song J, Zhu B, Bradley DG, Brinkman FS, Lau LP, Whiteside MD, Walker A, Wheeler TT, Casey T, German JB, Lemay DG, Maqbool NJ, Molenaar AJ, Seo S, Stothard P, Baldwin CL, Baxter R, Brinkmeyer-Langford CL, Brown WC, Childers CP, Connelley T, Ellis SA, Fritz K, Glass EJ, Herzig CT, Iivanainen A, Lahmers KK, Bennett AK, Dickens CM, Gilbert JG, Hagen DE, Salih H, Aerts J, Caetano AR, Dalrymple B, Garcia JF, Gill CA, Hiendleder SG, Memili E, Spurlock D, Williams JL, Alexander L, Brownstein MJ, Guan L, Holt RA, Jones SJ, Marra MA, Moore R, Moore SS, Roberts A, Taniguchi M, Waterman RC, Chacko J, Chandrabose MM, Cree A, Dao MD, Dinh HH, Gabisi RA, Hines S, Hume J, Jhangiani SN, Joshi V, Kovar CL, Lewis LR, Liu YS, Lopez J, Morgan MB, Nguyen NB, Okwuonu GO, Ruiz SJ, Santibanez J, Wright RA, Buhay C, Ding Y, Dugan-Rocha S, Herdandez J, Holder M, Sabo A, Egan A, Goodell J, Wilczek-Boney K, Fowler GR, Hitchens ME, Lozado RJ, Moen C, Steffen D, Warren JT, Zhang J, Chiu R, Schein JE, Durbin KJ, Havlak P, Jiang H, Liu Y, Qin X, Ren Y, Shen Y, Song H, Bell SN, Davis C, Johnson AJ, Lee S, Nazareth LV, Patel BM, Pu LL, Vattathil S, Williams-Jr RL, Curry S, Hamilton C, Sodergren E, Wheeler DA, Barris W, Bennett GL, Eggen A, Green RD, Harhay GP, Hobbs M, Jann O, Keele JW, Kent MP, Lien S, McKay SD, McWilliam S, Ratnakumar A, Schnabel RD, Smith T, Snelling WM, Sonstegard TS, Stone RT, Sugimoto Y, Takasuga A, Taylor JF, Van Tassell CP, Macneil MD, Abatepaulo AR, Abbey CA, Ahola V, Almeida IG, Amadio AF, Anatriello E, Bahadue SM, Biase FH, Boldt CR, Carroll JA, Carvalho WA, Cervelatti EP, Chacko E, Chapin JE, Cheng Y, Choi J, Colley AJ, de Campos TA, De Donato M, Santos IK, de Oliveira CJ, Deobald H, Devinoy E, Donohue KE, Dovc P, Eberlein A, Fitzsimmons CJ, Franzin AM, Garcia GR, Genini S, Gladney CJ, Grant JR, Greaser ML, Green JA, Hadsell DL, Hakimov HA, Halgren R, Harrow JL, Hart EA, Hastings N, Hernandez M, Hu ZL, Ingham A, Iso-Touru T, Jamis C, Jensen K, Kapetis D, Kerr T, Khalil SS, Khatib H, Kolbehdari D, Kumar CG, Kumar D, Leach R, Lee JC, Li C, Logan KM, Malinverni R, Marques E, Martin WF, Martins NF, Maruyama SR, Mazza R, McLean KL, Medrano JF, Moreno BT, More DD, Muntean CT, Nandakumar HP, Nogueira MF, Olsaker I, Pant SD, Panzitta F, Pastor RC, Poli MA, Poslusny N, Rachagani S, Ranganathan S, Razpet A, Riggs PK, Rincon G, Rodriguez-Osorio N, Rodriguez-Zas SL, Romero NE, Rosenwald A, Sando L, Schmutz SM, Shen L, Sherman L, Southey BR, Lutzow YS, Sweedler JV, Tammen I, Telugu BP, Urbanski JM, Utsunomiya YT, Verschoor CP, Waardenberg AJ, Wang Z, Ward R, Weikard R, Welsh-Jr TH, White SN, Wilming LG, Wunderlich KR, Yang J, Zhao FQ (2009) The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science 324(5296): 522-528.

CiteScore: n/a • DOI: 10.1126/science.1169588 • PMID: 19390049 • SCOPUS ID: 2-s2.0-77951621301 • SCOPUS CITATION COUNT: 940

Karsi A, Gulsoy N, Corb E, Dumpala PR, Lawrence ML (2009) High-throughput bioluminescence-based mutant screening strategy for identification of bacterial virulence genes. Applied and Environmental Microbiology 75(7): 2166-2175.

CiteScore: n/a • DOI: 10.1128/AEM.02449-08 • PMID: 19201969 • SCOPUS ID: 2-s2.0-63849099779 • SCOPUS CITATION COUNT: 36

Sagaram US, DeAngelis KM, Trivedi P, Andersen GL, Lu SE,Wang N (2009) Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing. Applied and Environmental Microbiology 75(6): 1566-1574.

CiteScore: n/a • DOI: 10.1128/AEM.02404-08 • PMID: 19151177 • SCOPUS ID: 2-s2.0-62149125538 • SCOPUS CITATION COUNT: 113

Elibol-Flemming B, Waldbieser GC, Wolters WR, Boyle CR, Hanson LA (2009) Expression analysis of selected immune-relevant genes in channel catfish during Edwardsiella ictaluri infection. Journal of Aquatic Animal Health 21(1): 23-35.

CiteScore: n/a • DOI: 10.1577/H08-009.1 • PMID: 19485123 • SCOPUS ID: 2-s2.0-67650687080 • SCOPUS CITATION COUNT: 30

Eells JB, Brown T (2009) Repeated developmental exposure to chlorpyrifos and methyl parathion causes persistent alterations in nicotinic acetylcholine subunit mRNA expression with chlorpyrifos altering dopamine metabolite levels. Neurotoxicology and Teratology 31(2): 98-103.

CiteScore: n/a • DOI: 10.1016/j.ntt.2008.10.002 • PMID: 18977431 • SCOPUS ID: 2-s2.0-61849169630 • SCOPUS CITATION COUNT: 18

Dumpala PR, Lawrence ML, Karsi A (2009) Proteome analysis of Edwardsiella ictaluri. Proteomics 9(5): 1353-1363.

CiteScore: n/a • DOI: 10.1002/pmic.200800652 • PMID: 19253294 • SCOPUS ID: 2-s2.0-63049127979 • SCOPUS CITATION COUNT: 14

Peethambaran B, Windham GL, Hawkins LK, Williams WP, Luthe DS (2009) Antifungal activity in maize silk proteins and role of chitinases in Aspergillus flavus resistance. Toxin Reviews 29(1): 27-39.

CiteScore: n/a • DOI: 10.3109/15569540903402874 • SCOPUS ID: 2-s2.0-77749315505 • SCOPUS CITATION COUNT: 26

Sabanadzovic S, Valverde RA, Brown JK, Martin RR, Tzanetakis IE (2009) Southern tomato virus: The link between the families Totiviridae and Partitiviridae. Virus Research 140(1-2): 130-137.

CiteScore: n/a • DOI: 10.1016/j.virusres.2008.11.018 • PMID: 19118586 • SCOPUS ID: 2-s2.0-60749128006 • SCOPUS CITATION COUNT: 100

Mobini R, Andersson BA, Erjefalt J, Hahn-Zoric M, Langston MA, Perkins AD, Cardell LO, Benson M (2009) A module-based analytical strategy to identify novel disease-associated genes shows an inhibitory role for interleukin 7 Receptor in allergic inflammation. BMC Systems Biology 3: 19.

CiteScore: n/a • DOI: 10.1186/1752-0509-3-19 • PMID: 19216740 • SCOPUS ID: 2-s2.0-62649129291 • SCOPUS CITATION COUNT: 34

Morse AM, Peterson DG, Islam-Faridi MN, Smith KE, Magbanua ZV, Garcia SA, Kubisiak TL, Amerson HV, Carlson JE, Nelson CD, Davis JM (2009) Evolution of genome size and complexity in Pinus. PLoS ONE 4(2): e4332.

CiteScore: n/a • DOI: 10.1371/journal.pone.0004332 • PMID: 19194510 • SCOPUS ID: 2-s2.0-84887212567 • SCOPUS CITATION COUNT: 128

Majji S, Thodima V, Arnizaut A, Deng Y, May W, Sittman D, Waldbieser GC, Hanson LA, Cuchens MA, Bengten E, Chinchar VG (2009) Expression profiles of cloned channel catfish (Ictalurus punctatus) lymphoid cell lines and mixed lymphocyte cultures. Developmental and Comparative Immunology 33(2): 224-234.

CiteScore: n/a • DOI: 10.1016/j.dci.2008.08.010 • PMID: 18824023 • SCOPUS ID: 2-s2.0-54849404673 • SCOPUS CITATION COUNT: 7

Kakani A, Li G, Peng Z (2009) Role of AUX1 in the control of organ identity during in vitro organogenesis and in mediating tissue specific auxin and cytokinin interaction in Arabidopsis. Planta 229(3): 645-657.

CiteScore: n/a • DOI: 10.1007/s00425-008-0846-6 • PMID: 19052775 • SCOPUS ID: 2-s2.0-59449102486 • SCOPUS CITATION COUNT: 37

Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker TM, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Narechania A, Otillar RP, Penning BW, Salamov AA, Wang Y, Zhang L, Carpita NC, Freeling M, Gingle AR, Hash CT, Keller B, Klein P, Kresovich S, McCann MC, Ming R, Peterson DG, Rahman MU, Ware D, Westhoff P, Mayer KF, Messing J, Rokhsar DS (2009) The Sorghum bicolor genome and the diversification of grasses. Nature 457(7229): 551-556.

CiteScore: n/a • DOI: 10.1038/nature07723 • PMID: 19189423 • SCOPUS ID: 2-s2.0-58449137410 • SCOPUS CITATION COUNT: 2318

van den Berg BH, Konieczka JH, McCarthy FM, Burgess SC (2009) ArrayIDer: automated structural re-annotation pipeline for DNA microarrays. BMC Bioinformatics 10: 30.

CiteScore: n/a • DOI: 10.1186/1471-2105-10-30 • PMID: 19166590 • SCOPUS ID: 2-s2.0-62249208089 • SCOPUS CITATION COUNT: 9

Donaldson JR, Nanduri B, Burgess SC, Lawrence ML (2009) Comparative proteomic analysis of Listeria monocytogenes strains F2365 and EGD. Applied and Environmental Microbiology 75(2): 366-373.

CiteScore: n/a • DOI: 10.1128/AEM.01847-08 • PMID: 19028911 • SCOPUS ID: 2-s2.0-58149391210 • SCOPUS CITATION COUNT: 37

Lee SR, Nanduri B, Pharr GT, Stokes JV, Pinchuk LM (2009) Bovine viral diarrhea virus infection affects the expression of proteins related to professional antigen presentation in bovine monocytes. Biochimica et Biophysica Acta-Proteins and Proteomics 1794(1): 14-22.

CiteScore: n/a • DOI: 10.1016/j.bbapap.2008.09.005 • PMID: 18930168 • SCOPUS ID: 2-s2.0-56449110483 • SCOPUS CITATION COUNT: 24

Booth NJ, Bilodeau-Bourgeois AL (2009) Proteomic analysis of head kidney tissue from high and low susceptibility families of channel catfish following challenge with Edwardsiella ictaluri. Fish and Shellfish Immunology 26(1): 193-196.

CiteScore: n/a • DOI: 10.1016/j.fsi.2008.03.003 • PMID: 19028110 • SCOPUS ID: 2-s2.0-59349115554 • SCOPUS CITATION COUNT: 31