Peer-Reviewed Publications

Martin RR, MacFarlane S, Sabanadzovic S, Quito D, Poudel B,Tzanetakis IE (2013) Viruses and virus diseases of Rubus. Plant Disease 97(2): 168-182. DOI: 10.1094/PDIS-04-12-0362-FE • SCOPUS ID: 2-s2.0-84873369588 • SCOPUS CITATION COUNT: 100

Opazo JC, Butts GT, Nery MF, Storz JF, Hoffmann FG (2013) Whole-genome duplication and the functional diversification of teleost fish hemoglobins. Molecular Biology and Evolution 30(1): 140-153. DOI: 10.1093/molbev/mss212 • SCOPUS ID: 2-s2.0-84871836802 • SCOPUS CITATION COUNT: 83

Blake JA, Dolan M, Drabkin H, Hill DP, Ni L, Sitnikov D, Bridges S, Burgess S, Buza T, McCarthy F, Peddinti D, Pillai L, Carbon S, Dietze H, Ireland A, Lewis SE, Mungall CJ, Gaudet P, Chisholm RL, Fey P, Kibbe WA, Basu S, Siegele DA, McIntosh BK, Renfro DP, Zweifel AE, Hu JC, Brown NH, Tweedie S, Alam-Faruque Y, Apweiler R, Auchinchloss A, Axelsen K, Bely B, Blatter MC, Bonilla C, Bougueleret L, Boutet E, Breuza L, Bridge A, Chan WM, Chavali G, Coudert E, Dimmer E, Estreicher A, Famiglietti L, Feuermann M, Gos A, Gruaz-Gumowski N, Hieta R, Hinz U, Hulo C, Huntley R, James J, Jungo F, Keller G, Laiho K, Legge D, Lemercier P, Lieberherr D, Magrane M, Martin MJ, Masson P, Mutowo-Muellenet P, O'Donovan C, Pedruzzi I, Pichler K, Poggioli D, Porras Millan P, Poux S, Rivoire C, Roechert B, Sawford T, Schneider M, Stutz A, Sundaram S, Tognolli M, Xenarios I, Foulger R, Lomax J, Roncaglia P, Khodiyar VK, Lovering RC, Talmud PJ, Chibucos M, Gwinn Giglio M, Chang HY, Hunter S, McAnulla C, Mitchell A, Sangrador A, Stephan R, Harris MA, Oliver SG, Rutherford K, Wood V, Bahler J, Lock A, Kersey PJ, McDowall MD, Staines DM, Dwinell M, Shimoyama M, Laulederkind S, Hayman T, Wang SJ, Petri V, Lowry T, D'Eustachio P, Matthews L, Balakrishnan R, Binkley G, Cherry JM, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hitz BC, Hong EL, Karra K, Miyasato SR, Nash RS, Park J, Skrzypek MS, Weng S, Wong ED, Berardini TZ, Li D, Huala E, Mi H, Thomas PD, Chan J, Kishore R, Sternberg P, Van Auken K, Howe D, Westerfield M (2013) Gene ontology annotations and resources. Nucleic Acids Research 41(D1): D530-D535. DOI: 10.1093/nar/gks1050 • SCOPUS ID: 2-s2.0-84874253819 • SCOPUS CITATION COUNT: 476

Nallamilli BR, Zhang J, Mujahid H, Malone BM, Bridges SM, Peng Z (2013) Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis. PLoS Genetics 9(3): e1003322. DOI: 10.1371/journal.pgen.1003322 • SCOPUS ID: 2-s2.0-84875994393 • SCOPUS CITATION COUNT: 88

Sun H, Yang J, Zhang T, Long LP, Jia K, Yang G, Webby RJ, Wan XF (2013) Using sequence data to infer the antigenicity of influenza virus. MBio 4(4): e0023013. DOI: 10.1093/gbe/evu256 • SCOPUS ID: 2-s2.0-84919656263 • SCOPUS CITATION COUNT: 48

Okada R, Yong CK, Valverde RA, Sabanadzovic S, Aoki N, Hotate S, Kiyota E, Moriyama H, Fukuhara T (2013) Molecular characterization of two evolutionarily distinct endornaviruses co-infecting common bean (Phaseolus vulgaris). Journal of General Virology 94(Pt 1): 220-229. DOI: 10.1099/vir.0.044487-0 • SCOPUS ID: 2-s2.0-84871309308 • SCOPUS CITATION COUNT: 59

Nanduri B, Suvarnapunya AE, Venkatesan M, Edelmann MJ (2013) Deubiquitinating enzymes as promising drug targets for infectious diseases. Current Pharmaceutical Design 19(18): 3234-3247. DOI: 10.2174/1381612811319180008 • SCOPUS ID: 2-s2.0-84878887655 • SCOPUS CITATION COUNT: 32

Mujahid H, Tan F, Zhang J, Nallamilli BR, Pendarvis K, Peng Z (2013) Nuclear proteome response to cell wall removal in rice (Oryza sativa). Proteome Science 11(1): 26. DOI: 10.1186/1477-5956-11-26 • SCOPUS ID: 2-s2.0-84879051038 • SCOPUS CITATION COUNT: 18

Bednarova A, Kodrik D,Krishnan N (2013) Unique roles of glucagon and glucagon-like peptides: Parallels in understanding the functions of adipokinetic hormones in stress responses in insects. Comparative Biochemistry and Physiology A - Molecular and Integrative Physiology 164(1): 91-100. DOI: 10.1016/j.cbpa.2012.10.012 • SCOPUS ID: 2-s2.0-84870163283 • SCOPUS CITATION COUNT: 45

Payne A, Schmidt TB, Nanduri B, Pendarvis K, Pittman JR, Thornton JA, Grissett J, Donaldson JR (2013) Proteomic analysis of the response of Listeria monocytogenes to bile salts under anaerobic conditions. Journal of Medical Microbiology 62(Pt 1): 25-35. DOI: 10.1099/jmm.0.049742-0 • SCOPUS ID: 2-s2.0-84871120845 • SCOPUS CITATION COUNT: 23

Magbanua ZV, Williams WP, Luthe DS (2013) The maize rachis affects Aspergillus flavus spread during ear development. Maydica 58(2): 182-188. SCOPUS ID: 2-s2.0-84880638391 • SCOPUS CITATION COUNT: 9

Tekedar HC, Karsi A, Williams ML, Vamenta S, Banes MM, Duke M, Scheffler BE, Lawrence ML (2013) Complete Genome Sequence of Channel Catfish Gastrointestinal Septicemia Isolate Edwardsiella tarda C07-087. Genome Announcements 1(6): e00959-13. DOI: 10.1128/genomeA.00959-13 • SCOPUS ID: 2-s2.0-84999622107 • SCOPUS CITATION COUNT: 22

Tekedar HC, Waldbieser GC, Karsi A, Liles MR, Griffin MJ, Vamenta S, Sonstegard T, Hossain M, Schroeder SG, Khoo L, Lawrence ML (2013) Complete Genome Sequence of a Channel Catfish Epidemic Isolate, Aeromonas hydrophila Strain ML09-119. Genome Announcements 1(5): e00755-13. DOI: 10.1128/genomeA.00755-13 • SCOPUS CITATION COUNT:

Paterson AH, Wendel JF, Gundlach H, Guo H, Jenkins J, Jin D, Llewellyn D, Showmaker KC, Shu S, Udall J, Yoo MJ, Byers R, Chen W, Doron-Faigenboim A, Duke MV, Gong L, Grimwood J, Grover C, Grupp K, Hu G, Lee TH, Li J, Lin L, Liu T, Marler BS, Page JT, Roberts AW, Romanel E, Sanders WS, Szadkowski E, Tan X, Tang H, Xu C, Wang J, Wang Z, Zhang D, Zhang L, Ashrafi H, Bedon F, Bowers JE, Brubaker CL, Chee PW, Das S, Gingle AR, Haigler CH, Harker D, Hoffmann LV, Hovav R, Jones DC, Lemke C, Mansoor S, Rahman M, Rainville LN, Rambani A, Reddy UK, Rong JK, Saranga Y, Scheffler BE, Scheffler JA, Stelly DM, Triplett BA, Van Deynze A, Vaslin MF, Waghmare VN, Walford SA, Wright RJ, Zaki EA, Zhang T, Dennis ES, Mayer KF, Peterson DG, Rokhsar DS, Wang X, Schmutz J (2012) Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature 492(7429): 423-427. DOI: 10.1038/nature11798 • SCOPUS ID: 2-s2.0-84871428041 • SCOPUS CITATION COUNT: 1036

Feugang JM, Youngblood RC, Greene JM, Fahad AS, Monroe WA, Willard ST,Ryan PL (2012) Application of quantum dot nanoparticles for potential non-invasive bio-imaging of mammalian spermatozoa. Journal of Nanobiotechnology 10: 45. DOI: 10.1186/1477-3155-10-45 • SCOPUS ID: 2-s2.0-84870914598 • SCOPUS CITATION COUNT: 57

Mackay J, Dean JF, Plomion C, Peterson DG, Canovas FM, Pavy N, Ingvarsson PK, Savolainen O, Guevara MA, Fluch S, Vinceti B, Abarca D, Diaz-Sala C, Cervera MT (2012) Towards decoding the conifer giga-genome. Plant Molecular Biology 80(6): 555-569. DOI: 10.1007/s11103-012-9961-7 • SCOPUS ID: 2-s2.0-84870241165 • SCOPUS CITATION COUNT: 81

Pirim H, Eksioglu B, Perkins AD, Yuceer C (2012) Clustering of high throughput gene expression data. Computers and Operations Research 39(12): 3046-3061. DOI: 10.1016/j.cor.2012.03.008 • SCOPUS ID: 2-s2.0-84862994964 • SCOPUS CITATION COUNT: 100

Rodriguez-Osorio N, Urrego R, Cibelli JB, Eilertsen K,Memili E (2012) Reprogramming mammalian somatic cells. Theriogenology 78(9): 1869-1886. DOI: 10.1016/j.theriogenology.2012.05.030 • SCOPUS ID: 2-s2.0-84868199540 • SCOPUS CITATION COUNT: 95

Pillai L, Chouvarine P, Tudor CO, Schmidt CJ, Vijay-Shanker K, McCarthy FM (2012) Developing a biocuration workflow for AgBase, a non-model organism database. Database 2012: bas038. DOI: 10.1093/database/bas038 • SCOPUS CITATION COUNT: 8

Curotto S, Lunsford K, Smith W, Thomason J, Bulla C (2012) Evidence of selective packaging and different alpha-granule subtypes in canine platelets. Journal of Comparative Pathology 147(4): 499-502. DOI: 10.1016/j.jcpa.2012.02.007 • SCOPUS ID: 2-s2.0-84868622965 • SCOPUS CITATION COUNT: 3