Peer-Reviewed Publications

Manda P, Ozkan S, Wang H, McCarthy F, Bridges SM (2012) Cross-Ontology multi-level association rule mining in the Gene Ontology. PLoS ONE 7(10): e47411. DOI: 10.1371/journal.pone.0047411 • SCOPUS ID: 2-s2.0-84867416846 • SCOPUS CITATION COUNT: 31

Weed BC, Borazjani A, Patnaik SS, Prabhu R, Horstemeyer MF, Ryan PL, Franz T, Williams LN, Liao J (2012) Stress state and strain rate dependence of the human placenta. Annals of Biomedical Engineering 40(10): 2255-2265. DOI: 10.1007/s10439-012-0588-2 • SCOPUS ID: 2-s2.0-84867231512 • SCOPUS CITATION COUNT: 13

Poudel B, Sabanadzovic S, Bujarski J, Tzanetakis IE (2012) Population structure of Blackberry yellow vein associated virus, an emerging crinivirus. Virus Research 169(1): 272-275. DOI: 10.1016/j.virusres.2012.07.009 • SCOPUS ID: 2-s2.0-84867216458 • SCOPUS CITATION COUNT: 23

Bhatty M, Fan R, Muir WM, Pruett SB, Nanduri B (2012) Transcriptomic analysis of peritoneal cells in a mouse model of sepsis: confirmatory and novel results in early and late sepsis. BMC Genomics 13: 509. DOI: 10.1186/1471-2164-13-509 • SCOPUS ID: 2-s2.0-84866557005 • SCOPUS CITATION COUNT: 9

Hsu CY, Adams JP, No K, Liang H, Meilan R, Pechanova O, Barakat A, Carlson JE, Page GP, Yuceer C (2012) Overexpression of CONSTANS homologs CO1 and CO2 fails to alter normal reproductive onset and fall bud set in woody perennial poplar. PLoS ONE 7(9): e45448. DOI: 10.1371/journal.pone.0045448 • SCOPUS ID: 2-s2.0-84866555351 • SCOPUS CITATION COUNT: 52

Kumar S, Kunec D, Buza JJ, Chiang HI, Zhou H, Subramaniam S, Pendarvis K, Cheng HH, Burgess SC (2012) Nuclear Factor kappa B is central to Marek's disease herpesvirus induced neoplastic transformation of CD30 expressing lymphocytes in-vivo. BMC Systems Biology 6: 123. DOI: 10.1186/1752-0509-6-123 • SCOPUS ID: 2-s2.0-84866173282 • SCOPUS CITATION COUNT: 19

Govindaraju A, Uzun A, Robertson L, Atli MO, Kaya A, Topper E, Crate EA, Padbury J, Perkins A,Memili E (2012) Dynamics of microRNAs in bull spermatozoa. Reproductive Biology and Endocrinology 10: 82. DOI: 10.1186/1477-7827-10-82 • SCOPUS ID: 2-s2.0-84866165341 • SCOPUS CITATION COUNT: 82

Reddy JS, Kumar R, Watt JM, Lawrence ML, Burgess SC, Nanduri B (2012) Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213. BMC Bioinformatics 13(Suppl 15): S4. DOI: 10.1186/1471-2105-13-S15-S4 • SCOPUS CITATION COUNT: 10

Cai Z, Ducatez MF, Yang J, Zhang T, Long LP, Boon AC, Webby RJ, Wan XF (2012) Identifying antigenicity-associated sites in highly pathogenic H5N1 influenza virus hemagglutinin by using sparse learning. Journal of Molecular Biology 422(1): 145-155. DOI: 10.1016/j.jmb.2012.05.011 • SCOPUS ID: 2-s2.0-84864583226 • SCOPUS CITATION COUNT: 45

Nery MF, Gonzalez DJ, Hoffmann FG, Opazo JC (2012) Resolution of the laurasiatherian phylogeny: Evidence from genomic data. Molecular Phylogenetics and Evolution 64(3): 685-689. DOI: 10.1016/j.ympev.2012.04.012 • SCOPUS ID: 2-s2.0-84863086549 • SCOPUS CITATION COUNT: 40

Pechan T, Gwaltney SR (2012) Calculations of relative intensities of fragment ions in the MSMS spectra of a doubly charged penta-peptide. BMC Bioinformatics 13(Suppl 15): S13. DOI: 10.1186/1471-2105-13-S15-S13 • SCOPUS CITATION COUNT: 8

Govindaraju A, Dogan S, Rodriguez-Osorio N, Grant K, Kaya A, Memili E (2012) Delivering value from sperm proteomics for fertility. Cell and Tissue Research 349(3): 783-793. DOI: 10.1007/s00441-012-1452-2 • SCOPUS ID: 2-s2.0-84866379287 • SCOPUS CITATION COUNT: 32

Pramod S, Downs KE, Welch ME (2012) Gene expression assays for actin, ubiquitin, and three microsatellite-encoding genes in Helianthus annuus (Asteraceae). American Journal of Botany 99(9): e350-e352. DOI: 10.3732/ajb.1200045 • SCOPUS ID: 2-s2.0-84866127168 • SCOPUS CITATION COUNT: 5

Wan XF (2012) Lessons from emergence of A/goose/Guangdong/1996-like H5N1 highly pathogenic avian influenza viruses and recent influenza surveillance efforts in southern China. Zoonoses and Public Health 59 Suppl 2: 32-42. DOI: 10.1111/j.1863-2378.2012.01497.x • SCOPUS ID: 2-s2.0-84866028578 • SCOPUS CITATION COUNT: 47

Villeneuve DL, Garcia-Reyero N, Martinovic-Weigelt D, Li Z, Watanabe KH, Orlando EF, Lalone CA, Edwards SW, Burgoon LD, Denslow ND, Perkins EJ, Ankley GT (2012) A graphical systems model and tissue-specific functional gene sets to aid transcriptomic analysis of chemical impacts on the female teleost reproductive axis. Mutation Research - Genetic Toxicology and Environmental Mutagenesis 746(2): 151-162. DOI: 10.1016/j.mrgentox.2011.12.016 • SCOPUS ID: 2-s2.0-84862794957 • SCOPUS CITATION COUNT: 19

Arroyo JI, Hoffmann FG, Good S, Opazo JC (2012) INSL4 pseudogenes help define the relaxin family repertoire in the common ancestor of placental mammals. Journal of Molecular Evolution 75(1-2): 73-78. DOI: 10.1007/s00239-012-9517-0 • SCOPUS ID: 2-s2.0-84868574735 • SCOPUS CITATION COUNT: 9

Wang B, Tedder ME, Perez CE, Wang G, de Jongh Curry AL, To F, Elder SH, Williams LN, Simionescu DT, Liao J (2012) Structural and biomechanical characterizations of porcine myocardial extracellular matrix. Journal of Materials Science: Materials in Medicine 23(8): 1835-1847. DOI: 10.1007/s11262-013-0878-2 • SCOPUS ID: 2-s2.0-84878636028 • SCOPUS CITATION COUNT: 14

Kirker GT, Wagner TL, Diehl SV (2012) Relationship between wood-inhabiting fungi and Reticulitermes spp. in four forest habitats of northeastern Mississippi. International Biodeterioration and Biodegradation 72: 18-25. DOI: 10.1016/j.ibiod.2012.04.011 • SCOPUS ID: 2-s2.0-84861338133 • SCOPUS CITATION COUNT: 27

Martelli GP, Abou Ghanem-Sabanadzovic N, Agranovsky AA, Al Rwahnih M, Dolja VV, Dovas CI, Fuchs M, Gugerli P, Hu JS, Jelkmann W, Katis NI, Maliogka VI, Melzer MJ, Menzel W, Rott ME, Rowhani A, Sabanadzovic S, Saldarelli P (2012) Taxonomic revision of the family Closteroviridae with special reference to the grapevine leafroll-associated members of the genus Amelovirus and the putative species unassigned to the family. Journal of Plant Pathology 94: 7-19. DOI: 10.4454/jpp.fa.2012.022 • SCOPUS CITATION COUNT:

Martin A, Papa R, Nadeau NJ, Hill RI, Counterman BA, Halder G, Jiggins CD, Kronforst MR, Long AD, McMillan WO, Reed RD (2012) Diversification of complex butterfly wing patterns by repeated regulatory evolution of a Wnt ligand. Proceedings of the National Academy of Sciences of the United States of America 109(31): 12632-12637. DOI: 10.1073/pnas.1204800109 • SCOPUS ID: 2-s2.0-84864508428 • SCOPUS CITATION COUNT: 198