Peer-Reviewed Publications

Sabanadzovic S, Abou Ghanem-Sabanadzovic N (2009) Identification and molecular characterization of a marafivirus in Rubus spp. Archives of Virology 154(11): 1729-1735. DOI: 10.1007/s00705-009-0510-x • SCOPUS ID: 2-s2.0-70350651278 • SCOPUS CITATION COUNT: 18

Ray DA, Platt RN, Batzer MA (2009) Reading between the LINEs to see into the past. Trends in Genetics 25(11): 475-479. DOI: 10.1016/j.tig.2009.09.006 • SCOPUS ID: 2-s2.0-70350247354 • SCOPUS CITATION COUNT: 1

Bright LA, Burgess SC, Chowdhary B, Swiderski CE, McCarthy FM (2009) Structural and functional-annotation of an equine whole genome oligoarray. BMC Bioinformatics 10(Suppl 11): S8. DOI: 10.1186/1471-2105-10-S11-S8 • SCOPUS CITATION COUNT: 19

Buza TJ, Kumar R, Gresham CR, Burgess SC, McCarthy FM (2009) Facilitating functional annotation of chicken microarray data. BMC Bioinformatics 10(Suppl 11): S2. DOI: 10.1186/1471-2105-10-S11-S2 • SCOPUS CITATION COUNT: 9

Malone BM, Perkins AD, Bridges SM (2009) Integrating phenotype and gene expression data for predicting gene function. BMC Bioinformatics 10(Suppl 11): S20. DOI: 10.1186/1471-2105-10-S11-S20 • SCOPUS CITATION COUNT: 8

Pendarvis K, Kumar R, Burgess SC, Nanduri B (2009) An automated proteomic data analysis workflow for mass spectrometry. BMC Bioinformatics 10(Suppl 11): S17. DOI: 10.1186/1471-2105-10-S11-S17 • SCOPUS CITATION COUNT: 15

Perkins AD, Langston MA (2009) Threshold selection in gene co-expression networks using spectral graph theory techniques. BMC Bioinformatics 10(Suppl 11): S4. DOI: 10.1186/1471-2105-10-S11-S4 • SCOPUS CITATION COUNT: 72

van den Berg BH, Thanthiriwatte C, Manda P, Bridges SM (2009) Comparing gene annotation enrichment tools for functional modeling of agricultural microarray data. BMC Bioinformatics 10(Suppl 11): S9. DOI: 10.1186/1471-2105-10-S11-S9 • SCOPUS CITATION COUNT:

Holly C, Ervin G, Jackson CR, Diehl SV, Kirker GT (2008) Effect of an invasive grass on ambient rates of decompostion and microbial community structure: A search for causality. Biological Invasions 11(8): 1855-1868. DOI: 10.1007/s10530-008-9364-5 • SCOPUS ID: 2-s2.0-70349504866 • SCOPUS CITATION COUNT: 18

Hatten NR, Borazjani H, Diehl SV, Prewitt ML (2009) Effects of composting on removal of nitrogen, phosphorus, and potassium from sawdust amended with chicken litter. Compost Science and Utilization 17: 166-172. DOI: 10.1080/1065657X.2009.10702418 • SCOPUS CITATION COUNT: 4

Kang Y, Prewitt ML, Diehl SV (2009) Proteomics for biodeterioration of wood (Pinus taeda): Challenging analysis by 2D-PAGE and MALDI-TOF-MS/MS. International Biodeterioration and Biodegradation 63(8): 1036-1044. DOI: 10.1016/j.ibiod.2009.07.008 • SCOPUS ID: 2-s2.0-71849102912 • SCOPUS CITATION COUNT: 17

Valverde RA, Sabanadzovic S (2009) A novel plant virus with unique properties infecting Japanese holly fern. Journal of General Virology 90(Pt 10): 2542-2549. DOI: 10.1099/vir.0.012674-0 • SCOPUS ID: 2-s2.0-70350475540 • SCOPUS CITATION COUNT: 16

Yueh FY, Zheng H, Singh JP, Burgess SC (2009) Preliminary evaluation of laser-induced breakdown spectroscopy for tissue classification. Spectrochimica Acta Part B-Atomic Spectroscopy 64(10): 1059-1067. DOI: 10.1016/j.sab.2009.07.025 • SCOPUS ID: 2-s2.0-72049117643 • SCOPUS CITATION COUNT: 98

Grady JG, Elder SH, Ryan PL, Swiderski CE, Rashmir-Raven AM (2009) Biomechanical and molecular characteristics of hereditary equine regional dermal asthenia in Quarter Horses. Veterinary Dermatology 20(5-6): 591-599. DOI: 10.1111/j.1365-3164.2009.00830.x • SCOPUS ID: 2-s2.0-73149116823 • SCOPUS CITATION COUNT: 27

Lu SE, Novak J, Austin FW, Gu G, Ellis D, Kirk M, Wilson-Stanford S, Tonelli M,Smith L (2009) Occidiofungin, a unique antifungal glycopeptide produced by a strain of Burkholderia contaminans. Biochemistry 48(35): 8312-8321. DOI: 10.1021/bi900814c • SCOPUS ID: 2-s2.0-69749119146 • SCOPUS CITATION COUNT: 96

Jankun-Kelly TJ, Lindeman AD, Bridges SM (2009) Exploratory visual analysis of conserved domains on multiple sequence alignments. BMC Bioinformatics 10(Suppl 11): S7. DOI: 10.1186/1471-2105-10-S11-S7 • SCOPUS CITATION COUNT: 12

Pyla R, Kim TJ, Silva JL, Jung YS (2009) Overproduction of poly-beta-hydroxybutyrate in the Azotobacter vinelandii mutant that does not express small RNA ArrF. Applied Microbiology and Biotechnology 84(4): 717-724. DOI: 10.1007/s00253-009-2002-z • SCOPUS ID: 2-s2.0-69949175636 • SCOPUS CITATION COUNT: 15

Thanthrige-Don N, Abdul-Careem MF, Shack LA, Burgess SC, Sharif S (2009) Analyses of the spleen proteome of chickens infected with Marek's disease virus. Virology 390(2): 356-367. DOI: 10.1016/j.virol.2009.05.020 • SCOPUS ID: 2-s2.0-67649976592 • SCOPUS CITATION COUNT: 30

Bridges SM, Burgess SC, McCarthy FM (2009) Introduction to the Proceedings of the Avian Genomics and Gene Ontology Annotation Workshop. BMC Genomics 10(Suppl 2): I1. DOI: 10.1186/1471-2164-10-S2-I1 • SCOPUS ID: 2-s2.0-67650657133 • SCOPUS CITATION COUNT: 1

Burt DW, Carre W, Fell M, Law AS, Antin PB, Weber J, Schmidt CJ, Burgess SC, McCarthy FM (2009) The Chicken Gene Nomenclature Committee Report. BMC Genomics 10(Suppl 2): S5. DOI: 10.1186/1471-2164-10-S2-S5 • SCOPUS ID: 2-s2.0-67650674067 • SCOPUS CITATION COUNT: 36