Peer-Reviewed Publications

Nanduri B, Shack LA, Burgess SC, Lawrence ML (2009) The transcriptional response of Pasteurella multocida to three classes of antibiotics. BMC Genomics 10(Suppl 2): S4. DOI: 10.1186/1471-2164-10-S2-S4 • SCOPUS ID: 2-s2.0-67650663953 • SCOPUS CITATION COUNT: 13

Shan X, Ray DA, Bunge JA, Peterson DG (2009) A bacterial artificial chromosome library for the Australian saltwater crocodile (Crocodylus porosus) and its utilization in gene isolation and genome characterization. BMC Genomics 10(Suppl 2): S9. DOI: 10.1186/1471-2164-10-S2-S9 • SCOPUS CITATION COUNT:

Warburton ML, Brooks TD, Krakowsky MD, Shan X, Windham GL,Williams WP (2009) Identification and mapping of new sources of resistance to AFL atoxin accumulation in maize. Crop Science 49(4): 1403-1408. DOI: 10.2135/cropsci2008.12.0696 • SCOPUS ID: 2-s2.0-67849103764 • SCOPUS CITATION COUNT: 57

McCarthy FM, Cooksey AM, Burgess SC (2009) Sequential detergent extraction prior to mass spectrometry analysis. Methods in Molecular Biology 528: 110-118. DOI: 10.1007/978-1-60327-310-7_7 • SCOPUS ID: 2-s2.0-62449241029 • SCOPUS CITATION COUNT: 12

Gaudet P, Chisholm RL, Berardini TZ, Dimmer E, Engel SR, Fey P, Hill DP, Howe D, Hu JC, Huntley R, Khodiyar VK, Kishore R, Li D, Lovering RC, McCarthy FM, Ni L, Petri V, Siegele DA, Tweedie S, Van Auken K, Wood V, Basu S, Carbon S, Dolan M, Mungall CJ, Dolinski K, Thomas P, Ashburner M, Blake JA, Cherry JM, Lewis SE (2009) The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species. PLoS Computational Biology 5(7): e1000431. DOI: 10.1371/journal.pcbi.1000431 • SCOPUS ID: 2-s2.0-70349244907 • SCOPUS CITATION COUNT: 136

McCarthy FM, Mahony TJ, Parcells MS, Burgess SC (2009) Understanding animal viruses using the Gene Ontology. Trends in Microbiology 17(7): 328-335. DOI: 10.1016/j.tim.2009.04.006 • SCOPUS ID: 2-s2.0-67650095108 • SCOPUS CITATION COUNT: 14

Brooks CP, Holmes C, Kramer K, Barnett B, Keitt TH (2009) The role of demography and markets in determining deforestation rates near Ranomafana National Park, Madagascar. PLoS ONE 4(6): e5783. DOI: 10.1371/journal.pone.0005783 • SCOPUS ID: 2-s2.0-67650132772 • SCOPUS CITATION COUNT: 14

Bunge JA, Chouvarine P, Peterson DG (2009) CotQuest: improved algorithm and software for nonlinear regression analysis of DNA reassociation kinetics data. Analytical Biochemistry 388(2): 322-330. DOI: 10.1016/j.ab.2009.03.007 • SCOPUS ID: 2-s2.0-64549087968 • SCOPUS CITATION COUNT: 4

Milev-Milovanovic I, Majji S, Thodima V, Deng Y, Hanson LA, Arnizaut A, Waldbieser GC, Chinchar VG (2009) Identification and expression analyses of poly [I:C]-stimulated genes in channel catfish (Ictalurus punctatus). Fish and Shellfish Immunology 26: 811-820. DOI: 10.1016/j.fsi.2009.03.006 • SCOPUS ID: 2-s2.0-67349222550 • SCOPUS CITATION COUNT: 20

Kunec D, Nanduri B, Burgess SC (2009) Experimental annotation of channel catfish virus by probabilistic proteogenomic mapping. Proteomics 9(10): 2634-2647. DOI: 10.1002/pmic.200800397 • SCOPUS ID: 2-s2.0-66449118774 • SCOPUS CITATION COUNT: 20

Feugang JM, Kaya A, Page GP, Chen L, Mehta T, Hirani K, Nazareth L, Topper E, Gibbs R, Memili E (2009) Two-stage genome-wide association study identifies integrin beta 5 as having potential role in bull fertility. BMC Genomics 10: 176. DOI: 10.1186/1471-2164-10-176 • SCOPUS ID: 2-s2.0-65649152280 • SCOPUS CITATION COUNT: 70

Rodriguez-Osorio N, Wang Z, Kasinathan P, Page GP, Robl JM, Memili E (2009) Transcriptional reprogramming of gene expression in bovine somatic cell chromatin transfer embryos. BMC Genomics 10: 190. DOI: 10.1186/1471-2164-10-190 • SCOPUS ID: 2-s2.0-65649126673 • SCOPUS CITATION COUNT: 30

Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigo R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, Nicholas FW, Reymond A, Rijnkels M, Skow LC, Zdobnov EM, Schook L, Womack J, Alioto T, Antonarakis SE, Astashyn A, Chapple CE, Chen HC, Chrast J, Camara F, Ermolaeva O, Henrichsen CN, Hlavina W, Kapustin Y, Kiryutin B, Kitts P, Kokocinski F, Landrum M, Maglott D, Pruitt K, Sapojnikov V, Searle SM, Solovyev V, Souvorov A, Ucla C, Wyss C, Anzola JM, Gerlach D, Elhaik E, Graur D, Reese JT, Edgar RC, McEwan JC, Payne GM, Raison JM, Junier T, Kriventseva EV, Eyras E, Plass M, Donthu R, Larkin DM, Reecy J, Yang MQ, Chen L, Cheng Z, Chitko-McKown CG, Liu GE, Matukumalli LK, Song J, Zhu B, Bradley DG, Brinkman FS, Lau LP, Whiteside MD, Walker A, Wheeler TT, Casey T, German JB, Lemay DG, Maqbool NJ, Molenaar AJ, Seo S, Stothard P, Baldwin CL, Baxter R, Brinkmeyer-Langford CL, Brown WC, Childers CP, Connelley T, Ellis SA, Fritz K, Glass EJ, Herzig CT, Iivanainen A, Lahmers KK, Bennett AK, Dickens CM, Gilbert JG, Hagen DE, Salih H, Aerts J, Caetano AR, Dalrymple B, Garcia JF, Gill CA, Hiendleder SG, Memili E, Spurlock D, Williams JL, Alexander L, Brownstein MJ, Guan L, Holt RA, Jones SJ, Marra MA, Moore R, Moore SS, Roberts A, Taniguchi M, Waterman RC, Chacko J, Chandrabose MM, Cree A, Dao MD, Dinh HH, Gabisi RA, Hines S, Hume J, Jhangiani SN, Joshi V, Kovar CL, Lewis LR, Liu YS, Lopez J, Morgan MB, Nguyen NB, Okwuonu GO, Ruiz SJ, Santibanez J, Wright RA, Buhay C, Ding Y, Dugan-Rocha S, Herdandez J, Holder M, Sabo A, Egan A, Goodell J, Wilczek-Boney K, Fowler GR, Hitchens ME, Lozado RJ, Moen C, Steffen D, Warren JT, Zhang J, Chiu R, Schein JE, Durbin KJ, Havlak P, Jiang H, Liu Y, Qin X, Ren Y, Shen Y, Song H, Bell SN, Davis C, Johnson AJ, Lee S, Nazareth LV, Patel BM, Pu LL, Vattathil S, Williams-Jr RL, Curry S, Hamilton C, Sodergren E, Wheeler DA, Barris W, Bennett GL, Eggen A, Green RD, Harhay GP, Hobbs M, Jann O, Keele JW, Kent MP, Lien S, McKay SD, McWilliam S, Ratnakumar A, Schnabel RD, Smith T, Snelling WM, Sonstegard TS, Stone RT, Sugimoto Y, Takasuga A, Taylor JF, Van Tassell CP, Macneil MD, Abatepaulo AR, Abbey CA, Ahola V, Almeida IG, Amadio AF, Anatriello E, Bahadue SM, Biase FH, Boldt CR, Carroll JA, Carvalho WA, Cervelatti EP, Chacko E, Chapin JE, Cheng Y, Choi J, Colley AJ, de Campos TA, De Donato M, Santos IK, de Oliveira CJ, Deobald H, Devinoy E, Donohue KE, Dovc P, Eberlein A, Fitzsimmons CJ, Franzin AM, Garcia GR, Genini S, Gladney CJ, Grant JR, Greaser ML, Green JA, Hadsell DL, Hakimov HA, Halgren R, Harrow JL, Hart EA, Hastings N, Hernandez M, Hu ZL, Ingham A, Iso-Touru T, Jamis C, Jensen K, Kapetis D, Kerr T, Khalil SS, Khatib H, Kolbehdari D, Kumar CG, Kumar D, Leach R, Lee JC, Li C, Logan KM, Malinverni R, Marques E, Martin WF, Martins NF, Maruyama SR, Mazza R, McLean KL, Medrano JF, Moreno BT, More DD, Muntean CT, Nandakumar HP, Nogueira MF, Olsaker I, Pant SD, Panzitta F, Pastor RC, Poli MA, Poslusny N, Rachagani S, Ranganathan S, Razpet A, Riggs PK, Rincon G, Rodriguez-Osorio N, Rodriguez-Zas SL, Romero NE, Rosenwald A, Sando L, Schmutz SM, Shen L, Sherman L, Southey BR, Lutzow YS, Sweedler JV, Tammen I, Telugu BP, Urbanski JM, Utsunomiya YT, Verschoor CP, Waardenberg AJ, Wang Z, Ward R, Weikard R, Welsh-Jr TH, White SN, Wilming LG, Wunderlich KR, Yang J, Zhao FQ (2009) The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science 324(5296): 522-528. DOI: 10.1126/science.1169588 • SCOPUS ID: 2-s2.0-77951621301 • SCOPUS CITATION COUNT: 985

Karsi A, Gulsoy N, Corb E, Dumpala PR, Lawrence ML (2009) High-throughput bioluminescence-based mutant screening strategy for identification of bacterial virulence genes. Applied and Environmental Microbiology 75(7): 2166-2175. DOI: 10.1128/AEM.02449-08 • SCOPUS ID: 2-s2.0-63849099779 • SCOPUS CITATION COUNT: 38

Sagaram US, DeAngelis KM, Trivedi P, Andersen GL, Lu SE,Wang N (2009) Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing. Applied and Environmental Microbiology 75(6): 1566-1574. DOI: 10.1128/AEM.02404-08 • SCOPUS ID: 2-s2.0-62149125538 • SCOPUS CITATION COUNT: 126

Elibol-Flemming B, Waldbieser GC, Wolters WR, Boyle CR, Hanson LA (2009) Expression analysis of selected immune-relevant genes in channel catfish during Edwardsiella ictaluri infection. Journal of Aquatic Animal Health 21(1): 23-35. DOI: 10.1577/H08-009.1 • SCOPUS ID: 2-s2.0-67650687080 • SCOPUS CITATION COUNT: 30

Eells JB, Brown T (2009) Repeated developmental exposure to chlorpyrifos and methyl parathion causes persistent alterations in nicotinic acetylcholine subunit mRNA expression with chlorpyrifos altering dopamine metabolite levels. Neurotoxicology and Teratology 31(2): 98-103. DOI: 10.1016/j.ntt.2008.10.002 • SCOPUS ID: 2-s2.0-61849169630 • SCOPUS CITATION COUNT: 19

Dumpala PR, Lawrence ML, Karsi A (2009) Proteome analysis of Edwardsiella ictaluri. Proteomics 9(5): 1353-1363. DOI: 10.1002/pmic.200800652 • SCOPUS ID: 2-s2.0-63049127979 • SCOPUS CITATION COUNT: 14

Peethambaran B, Windham GL, Hawkins LK, Williams WP, Luthe DS (2009) Antifungal activity in maize silk proteins and role of chitinases in Aspergillus flavus resistance. Toxin Reviews 29(1): 27-39. DOI: 10.3109/15569540903402874 • SCOPUS ID: 2-s2.0-77749315505 • SCOPUS CITATION COUNT: 27

Sabanadzovic S, Valverde RA, Brown JK, Martin RR, Tzanetakis IE (2009) Southern tomato virus: The link between the families Totiviridae and Partitiviridae. Virus Research 140(1-2): 130-137. DOI: 10.1016/j.virusres.2008.11.018 • SCOPUS ID: 2-s2.0-60749128006 • SCOPUS CITATION COUNT: 104