Peer-Reviewed Publications

Mobini R, Andersson BA, Erjefalt J, Hahn-Zoric M, Langston MA, Perkins AD, Cardell LO, Benson M (2009) A module-based analytical strategy to identify novel disease-associated genes shows an inhibitory role for interleukin 7 Receptor in allergic inflammation. BMC Systems Biology 3: 19. DOI: 10.1186/1752-0509-3-19 • SCOPUS ID: 2-s2.0-62649129291 • SCOPUS CITATION COUNT: 35

Morse AM, Peterson DG, Islam-Faridi MN, Smith KE, Magbanua ZV, Garcia SA, Kubisiak TL, Amerson HV, Carlson JE, Nelson CD, Davis JM (2009) Evolution of genome size and complexity in Pinus. PLoS ONE 4(2): e4332. DOI: 10.1371/journal.pone.0004332 • SCOPUS ID: 2-s2.0-84887212567 • SCOPUS CITATION COUNT: 131

Majji S, Thodima V, Arnizaut A, Deng Y, May W, Sittman D, Waldbieser GC, Hanson LA, Cuchens MA, Bengten E, Chinchar VG (2009) Expression profiles of cloned channel catfish (Ictalurus punctatus) lymphoid cell lines and mixed lymphocyte cultures. Developmental and Comparative Immunology 33(2): 224-234. DOI: 10.1016/j.dci.2008.08.010 • SCOPUS ID: 2-s2.0-54849404673 • SCOPUS CITATION COUNT: 7

Kakani A, Li G, Peng Z (2009) Role of AUX1 in the control of organ identity during in vitro organogenesis and in mediating tissue specific auxin and cytokinin interaction in Arabidopsis. Planta 229(3): 645-657. DOI: 10.1007/s00425-008-0846-6 • SCOPUS ID: 2-s2.0-59449102486 • SCOPUS CITATION COUNT: 40

Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker TM, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Narechania A, Otillar RP, Penning BW, Salamov AA, Wang Y, Zhang L, Carpita NC, Freeling M, Gingle AR, Hash CT, Keller B, Klein P, Kresovich S, McCann MC, Ming R, Peterson DG, Rahman MU, Ware D, Westhoff P, Mayer KF, Messing J, Rokhsar DS (2009) The Sorghum bicolor genome and the diversification of grasses. Nature 457(7229): 551-556. DOI: 10.1038/nature07723 • SCOPUS ID: 2-s2.0-58449137410 • SCOPUS CITATION COUNT: 2486

van den Berg BH, Konieczka JH, McCarthy FM, Burgess SC (2009) ArrayIDer: automated structural re-annotation pipeline for DNA microarrays. BMC Bioinformatics 10: 30. DOI: 10.1186/1471-2105-10-30 • SCOPUS ID: 2-s2.0-62249208089 • SCOPUS CITATION COUNT: 9

Donaldson JR, Nanduri B, Burgess SC, Lawrence ML (2009) Comparative proteomic analysis of Listeria monocytogenes strains F2365 and EGD. Applied and Environmental Microbiology 75(2): 366-373. DOI: 10.1128/AEM.01847-08 • SCOPUS ID: 2-s2.0-58149391210 • SCOPUS CITATION COUNT: 38

Lee SR, Nanduri B, Pharr GT, Stokes JV, Pinchuk LM (2009) Bovine viral diarrhea virus infection affects the expression of proteins related to professional antigen presentation in bovine monocytes. Biochimica et Biophysica Acta-Proteins and Proteomics 1794(1): 14-22. DOI: 10.1016/j.bbapap.2008.09.005 • SCOPUS ID: 2-s2.0-56449110483 • SCOPUS CITATION COUNT: 28

Booth NJ, Bilodeau-Bourgeois AL (2009) Proteomic analysis of head kidney tissue from high and low susceptibility families of channel catfish following challenge with Edwardsiella ictaluri. Fish and Shellfish Immunology 26(1): 193-196. DOI: 10.1016/j.fsi.2008.03.003 • SCOPUS ID: 2-s2.0-59349115554 • SCOPUS CITATION COUNT: 33

Kunec D, van Haren S, Burgess SC, Hanson LA (2009) A Gateway recombination herpesvirus cloning system with negative selection that produces vectorless progeny. Journal of Virological Methods 155(1): 82-86. DOI: 10.1016/j.jviromet.2008.09.018 • SCOPUS ID: 2-s2.0-57549110432 • SCOPUS CITATION COUNT: 5

Shim JW, Wise DA, Elder SH (2008) Effect of cytoskeletal disruption on mechanotransduction of hydrostatic pressure by C3H10T1/2 murine fibroblasts. Open Orthopaedics Journal 2: 155-162. DOI: 10.2174/1874325000802010155 • SCOPUS CITATION COUNT:

Khijwania SK, Kim CK, Singh JP, Burgess SC (2008) Optimized fiber optic bioprobe with high spectral contrast exploiting laser-induced fluorescence for malignancy diagnosis. Applied Optics 47(35): 6615-6624. DOI: 10.1364/AO.47.006615 • SCOPUS ID: 2-s2.0-58949100720 • SCOPUS CITATION COUNT: 3

Mujahid S, Pechan T, Wang C (2008) Protein expression by Listeria monocytogenes grown on a RTE-meat matrix. International Journal of Food Microbiology 128(2): 203-211. DOI: 10.1016/j.ijfoodmicro.2008.08.007 • SCOPUS ID: 2-s2.0-55749113179 • SCOPUS CITATION COUNT: 17

Jung YS, Kwon YM (2008) Small RNA ArrF regulates the expression of sodB and feSII genes in Azotobacter vinelandii. Current Microbiology 57(6): 593-597. DOI: 10.1007/s00284-008-9248-z • SCOPUS ID: 2-s2.0-56949102349 • SCOPUS CITATION COUNT: 37

Srivastava SK, Daggolu PR, Burgess SC, Minerick AR (2008) Dielectrophoretic characterization of erythrocytes: positive ABO blood types. Electrophoresis 29(24): 5033-5046. DOI: 10.1002/elps.200800166 • SCOPUS ID: 2-s2.0-59349107515 • SCOPUS CITATION COUNT: 73

Dail MB, Shack LA, Chambers JE, Burgess SC (2008) Global liver proteomics of rats exposed for 5 days to phenobarbital identifies changes associated with cancer and with CYP metabolism. Toxicological Sciences 106(2): 556-569. DOI: 10.1093/toxsci/kfn198 • SCOPUS ID: 2-s2.0-56649094587 • SCOPUS CITATION COUNT: 18

Saha S, Bridges SM, Magbanua ZV, Peterson DG (2008) Discovering relationships among dispersed repeats using spatial association rule mining. BMC Bioinformatics 9: O4. DOI: 10.1186/1471-2105-9-S10-O4 • SCOPUS CITATION COUNT:

Scott JJ, Oh DC, Yuceer MC, Klepzig KD, Clardy J,Currie CR (2008) Bacterial protection of beetle-fungus mutualism. Science 322(5898): 63. DOI: 10.1126/science.1160423 • SCOPUS ID: 2-s2.0-53349101019 • SCOPUS CITATION COUNT: 411

Nannapaneni R, Muthaiyan A, Crandall PG, Johnson MG, O'Bryan CA, Chalova VI, Callaway TR, Carroll JA, Arthington JD, Nisbet DJ,Ricke SC (2008) Antimicrobial activity of commercial citrus-based natural extracts against Escherichia coli O157:H7 isolates and mutant strains. Foodborne Pathogens and Disease 5(5): 695-699. DOI: 10.1089/fpd.2008.0124 • SCOPUS ID: 2-s2.0-53849128525 • SCOPUS CITATION COUNT: 66

Chitteti BR, Tan F, Mujahid H, Magee GB, Bridges SM, Peng Z (2008) Comparative analysis of proteome differential regulation during cell dedifferentiation in Arabidopsis. Proteomics 8(20): 4303-4316. DOI: 10.1002/pmic.200701149 • SCOPUS ID: 2-s2.0-55749100977 • SCOPUS CITATION COUNT: 27