Peer-Reviewed Publications

Harris MA, Deegan JI, Ireland A, Lomax J, Ashburner M, Tweedie S, Carbon S, Lewis S, Mungall C, Day-Richter J, Eilbeck K, Blake JA, Bult C, Diehl AD, Dolan M, Drabkin H, Eppig JT, Hill DP, Ni L, Ringwald M, Balakrishnan R, Binkley G, Cherry JM, Christie KR, Costanzo MC, Dong Q, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Hong EL, Krieger CJ, Miyasato SR, Nash, RS, Park, J, Skrzypek, MS, Weng, S, Wong ED, Zhu KK, Botstein D, Dolinski K, Livstone MS, Oughtred R, Berardini T, Li D, Rhee SY, Apweiler R, Barrell D, Camon E, Dimmer E, Huntley R, Mulder N, Khodiyar VK, Lovering RC, Povey S, Chisholm R, Fey P, Gaudet P, Kibbe W, Kishore R, Schwarz EM, Sternberg P, Van Auken K, Giglio MG, Hannick L, Wortman J, Aslett M, Berriman M, Wood V, Jacob H, Laulederkind S, Petri V, Shimoyama M, Smith J, Twigger S, Jaiswal P, Seigfried T, Howe D, Westerfield M, Collmer C, Torto-Alalibo T, Feltrin E, Valle G, Bromberg S, Burgess S, McCarthy F (2008) The Gene Ontology project in 2008. Nucleic Acids Research 36(SUPPL. 1): D440-D444. DOI: 10.1093/nar/gkm883 • SCOPUS ID: 2-s2.0-84984996500 • SCOPUS CITATION COUNT: 680

van den Berg BH, Harris T, McCarthy FM, Lamont SJ, Burgess SC (2007) Non-electrophoretic differential detergent fractionation proteomics using frozen whole organs. Rapid Communications in Mass Spectrometry 21(23): 3905-3909. DOI: 10.1002/rcm.3287 • SCOPUS ID: 2-s2.0-36849000276 • SCOPUS CITATION COUNT: 9

Virden WS, Thaxton JP, Corzo A, Dozier WA, Kidd MT (2007) Evaluation of models using corticosterone and adrenocorticotropin to induce conditions mimicking physiological stress in commercial broilers. Poultry Science 86(12): 2485-2491. DOI: 10.3382/ps.2006-00215 • SCOPUS ID: 2-s2.0-36849024395 • SCOPUS CITATION COUNT: 27

Tan F, Li G, Chitteti BR, Peng Z (2007) Proteome and phosphoproteome analysis of chromatin associated proteins in rice (Oryza sativa). Proteomics 7(24): 4511-4527. DOI: 10.1002/pmic.200700580 • SCOPUS ID: 2-s2.0-38049067580 • SCOPUS CITATION COUNT: 65

Buza TJ, McCarthy FM, Burgess SC (2007) Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome. BMC Genomics 8: 425. DOI: 10.1186/1471-2164-8-425 • SCOPUS ID: 2-s2.0-38349115673 • SCOPUS CITATION COUNT: 20

Bridges SM, Magee GB, Wang N, Williams WP, Burgess SC, Nanduri B (2007) ProtQuant: a tool for the label-free quantification of MudPIT proteomics data. BMC Bioinformatics 8(Suppl 7): S24. DOI: 10.1186/1471-2105-8-S7-S24 • SCOPUS ID: 2-s2.0-38549091691 • SCOPUS CITATION COUNT: 47

Sanders WS, Bridges SM, McCarthy FM, Nanduri B, Burgess SC (2007) Prediction of peptides observable by mass spectrometry applied at the experimental set level. BMC Bioinformatics 8(Suppl 7): S23. DOI: 10.1186/1471-2105-8-S7-S23 • SCOPUS ID: 2-s2.0-38349172005 • SCOPUS CITATION COUNT: 64

Wilkins D, Gusev Y, Loganantharaj R, Bridges SM, Winters-Hilt S, Wren JD (2007) Proceedings of the Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society. BMC Bioinformatics 8(Suppl 7): S1. DOI: 10.1186/1471-2105-8-S7-S1 • SCOPUS ID: 2-s2.0-38549131388 • SCOPUS CITATION COUNT: 1

Mujahid S, Pechan T, Wang C (2007) Improved solubilization of surface proteins from Listeria monocytogenes for 2-DE. Electrophoresis 28(21): 3998-4007. DOI: 10.1002/elps.200600858 • SCOPUS ID: 2-s2.0-36349021369 • SCOPUS CITATION COUNT: 27

Liu D, Lawrence ML, Austin FW, Ainsworth AJ (2007) A multiplex PCR for species- and virulence-specific determination of Listeria monocytogenes. Journal of Microbiological Methods 71(2): 133-140. DOI: 10.1016/j.mimet.2007.08.007 • SCOPUS ID: 2-s2.0-35148830364 • SCOPUS CITATION COUNT: 211

Sagirkaya H, Misirlioglu M, Kaya A, First NL, Parrish JJ, Memili E (2007) Developmental potential of bovine oocytes cultured in different maturation and culture conditions. Animal Reproduction Science 101(3-4): 225-240. DOI: 10.1016/j.anireprosci.2006.09.016 • SCOPUS ID: 2-s2.0-34547124097 • SCOPUS CITATION COUNT: 74

Wilkinson JR, Yu J, Abbas HK, Scheffler BE, Kim HS, Nierman WC, Bhatnagar D, Cleveland TE (2007) Aflatoxin formation and gene expression in response to carbon source media shift in Aspergillus parasiticus. Food Additives and Contaminants Part A-Chemistry Analysis Control Exposure and Risk Assessment 24(10): 1051-1060. DOI: 10.1080/02652030701579454 • SCOPUS ID: 2-s2.0-34748826140 • SCOPUS CITATION COUNT: 27

Rodriguez-Osorio N, Kim IJ, Wang H, Kaya A,Memili E (2007) Melatonin increases cleavage rate of porcine preimplantation embryos in vitro. Journal of Pineal Research 43(3): 283-288. DOI: 10.1111/j.1600-079X.2007.00475.x • SCOPUS ID: 2-s2.0-34548427517 • SCOPUS CITATION COUNT: 121

Cogburn LA, Porter TE, Duclos MJ, Simon J, Burgess SC, Zhu JJ, Cheng HH, Dodgson JB, Burnside J (2007) Functional genomics of the chicken--a model organism. Poultry Science 86(10): 2059-2094. DOI: 10.1093/ps/86.10.2059 • SCOPUS ID: 2-s2.0-35348826030 • SCOPUS CITATION COUNT: 101

Liu D, Lawrence ML, Ainsworth AJ, Austin FW (2007) Toward an improved laboratory definition of Listeria monocytogenes virulence. International Journal of Food Microbiology 118(2): 101-115. DOI: 10.1016/j.ijfoodmicro.2007.07.045 • SCOPUS ID: 2-s2.0-34548447085 • SCOPUS CITATION COUNT: 57

Liu D, Lawrence ML, Pinchuk LM, Ainsworth AJ, Austin FW (2007) Characteristics of cell-mediated, anti-listerial immunity induced by a naturally avirulent Listeria monocytogenes serotype 4a strain HCC23. Archives of Microbiology 188(3): 251-256. DOI: 10.1007/s00203-007-0242-9 • SCOPUS ID: 2-s2.0-34547790882 • SCOPUS CITATION COUNT: 9

Dail MB, Burgess SC, Meek EC, Wagner J, Baravik J, Chambers JE (2007) Spatial distribution of CYP2B1/2 messenger RNA within the rat liver acinus following exposure to the inducers phenobarbital and dieldrin. Toxicological Sciences 99(1): 35-42. DOI: 10.1093/toxsci/kfm129 • SCOPUS ID: 2-s2.0-34547898382 • SCOPUS CITATION COUNT: 7

Park BS, Kwon YM, Pyla R, Boyle JA, Jung YS (2007) E1 component of pyruvate dehydrogenase complex does not regulate the expression of NADPH-ferredoxin reductase in Azotobacter vinelandii. FEMS Microbiology Letters 273(2): 244-252. DOI: 10.1111/j.1574-6968.2007.00797.x • SCOPUS ID: 2-s2.0-34447558703 • SCOPUS CITATION COUNT: 7

Brooks TD, Bushman BS, Williams WP, McMullen MD, Buckley PM (2007) Genetic basis of resistance to fall armyworm (Lepidoptera: Noctuidae) and southwestern corn borer (Lepidoptera: Crambidae) leaf-feeding damage in maize. Journal of Economic Entomology 100(4): 1470-1475. DOI: 10.1603/0022-0493(2007)100[1470:GBORTF]2.0.CO;2 • SCOPUS ID: 2-s2.0-34548145092 • SCOPUS CITATION COUNT:

Lopez L, Camas A, Shivaji R, Ankala A, Williams P, Luthe D (2007) Mir1-CP, a novel defense cysteine protease accumulates in maize vascular tissues in response to herbivory. Planta 226(2): 517-527. DOI: 10.1007/s00425-007-0501-7 • SCOPUS ID: 2-s2.0-34249995763 • SCOPUS CITATION COUNT: 71